XLOC_000679 (wu:fc75a09)


Basic Information

Item Value
gene id XLOC_000679
gene name wu:fc75a09
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 52754085 ~ 52763447 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001150
ATGCCACGTCCGGTTAAAGAAATGCAGATGAGGACTGTTCCGAGAAAACTAAGAACTATACATGATCTCCAAATGAGTCGATTTGGTAAGCCGTGGCCCAAACACGGACTCCAGCTCTTATACTGGTTTGTGAAAGAGTGCATTTGGGAAAACGACGACGAAATGTTCCTGGCGTGCGACCCGACGACAGGAATCTTTGGCTTTCACCCCTTTGAGAACAGAAGCAACGACCGCAACGAGAAACTTCTTCCAGACATAGATTCATCATACTATGTGGTCGGGAATCTGTATTCGCCTCAAGCAAACATGTTGAAGGATTACGTGAAAAAAAATAAGTACGTCCAGAATGATCTCCAAAACACAGACCGCATCATCGTCACCACCACGCAACAAAAGCAGTGTTTTGGGAAAATATACGCAACCACACACAAAGATAAGTTTGATTACGACCCGAACGACACATTTCACATCTCAAGGAGCCTCCTGAAGAGCATCCAATCATTTGAGAGTGTTGAAGATTTTCTGAGGAGCGTTGGAGATGGTGAAGTCTCTTATCAGATGTGTTTGGTAGCGATGGTTCGAgtgcatgatgatgatgatgatgatgatgattcggACTTAAAAGATGAGATGAAATCAAAGAGCAGCGCCGCTGATCATGCTGATACTGATAGTGAGAGACCGCTGCGAAACTGTGGCTGCACCATACTCTGAAAATCCTTTTGAGAGTAAAAGGGAGTTCAAAAGTACACTGGAAAGTCAAGGGTGTGGTTTTTACATGCTTTTTAATCGCGCTTGCTAGATTAGTTTAGAATTTCCAATAGCATCTGGCTACATGCAATCttaaacactttcgcatgtcgagatgttcatgatatgtgtgtgtgctggcgctcacgggcacacgcaaagcttgaaggtaaacaaacaacggattatcataaacattttatcgataattatttacacagttagcattaagaaggaacatagaaacgttatctgactaacatctagcagctaaatgtgtctggaaaaatattcaaagacttttattctcataaaccgcgcgcacgtgaatgcgtctgactgttctgattggctaaagtagacgtctcacgtcagcacattctagacgtgTACGTgctctaaagcctgatttatacttctgcgtcaagtgaccggcgtaactcacggcgcaggcaacgcgcgtggctgtgcatttatacttctgcgcgctgtctctgtcagtctgcattaacacttccgaaacgctagttggcagtgaggtgtaaatgttcctctgtgtcgagtttcttcgctacttttttgcatttcctgaacacttcctgtatgtacaagtggctcaaactagctcattttgaggcaggaaccggcggacgtgcaacaactttaactatgaggtaaacacaaaacaaaactttccatccggagctcattcacggtactccacacttgtaaacaatcgctcgcgcggcgtcgcgccattcgcgcggctctcagtcccgcccagactcgtcagtgctaccaagccgaccaatcacagagcttgcactacgcgtcgttgcgacgtgtagttacattttttgagaggtgcacgtcagtgacggcaatggccacggcgaagggctatgcgtcagcgccgtagcatacgccggtgtttgacgcagaagtataaatcagccttaacacgcAGCCACGCCCCCTGGGTCACAGATTTCGACGGTCACAGAATATGGTGTAAcaccggcaatcttccttctgcattcacacagcgcagcattccagcaaattaccggtaatgttacaacttctttttCCGGAATATAGCCAGAACGattttaccggtattttcaaaaagggcctgttcacacatacaacctttccggaaaattgccggtaattttccgaaaaggtctgtatgtgtgaaaggggctttagggtgctttcacacctacacttttgtttcggaacgtgtctcgattgcccagttagcgcggttcgtttggcaatcaccatcaaaccaccacctctcctgacagtttagcgggacgctgcaaaataaaccccgacactctgaccaatgtgaggagagtttactcgcacgtgacttgttttagctcttttggtccgattagaaactttgcaatgtgaaagccaaccgctccaagagcaaagagcaacaatgtaacaattgtaatctctgtttcggaacaactgaatcgattcacaagtgtgaaagcacccttagacacaTGCACTCAATAGAGCTGATGACATCGTTGTGAGGAGGAGGTAGggcaaagtccctttaaagctgcctttccactgcatcTGACAAACGAcagactggaagtcattcatttttaaaggagagtagtccgggagttccgatcatctctgtATGCGGAAAATTCAGGCCTGATTTAAGCTGCGGATACACAGATTACTAAACCAAAAAACTTTAGTTTTTAAGTGTAGCTGGTTCATTTAAACGTACAGAcgtcaagctttatgtggatatatttatgtcgtataaacattttttatttttattttttttaatatacgaAAGTTAGAATATATAATCACAGTATGTTAACAAGAAATCAAAGAGACAAAAAGAgcaacaattttggaaaaagaaacaacaacagataacaaaaaaataaacaaacaaacaacaaaaaaacaggaggggtaaatacattacaagttaaagaaaaagattatataatttacaaatttcagttgtttttaaagcctttttgtaaAAGAGTTAGACACTGTTTCAAAGTAATACTGCATTTCAgtaagcaaaatataaaaaaaaggtttttggtttgaaaatttacatttatggatgtaaaattttgttaataagacaagaagattaagaaaatatgttttctttttatgtaaagcCCCCGTTCCATAattaacaaaaccaaataaaacattcTCCCACAGCAAGGAAAATTCCTCATCAACATTCTCAATTATAAAAAGTGAGAAGTCTTTCCAAAGCAACCTAGAGTAATTGCATTGCCAAAATAAGTGAACCAGGGACTCAGGGTGCTGCCCACAAAATGTCGTATCTAAGTTTGGTCTGAGCTTCTCCCctggagaaacgtcagtctatagcgatcgatgattggctgctgtactagtaggcggggcttcattttcCATATTGATCATTACAATTTTCCCCATTGAAAACTATGAGTGACACGTCctgtgtattctagagtctttgggTAGGGTTAAGTATATGCAtgaaaagcattgcatgcagtctTACCTTGTATTTGCACCCGGTTTGCATCCAGACCTTTCTCAGAATTTCGTCAGACAGTAGGcctgttttaaactttttttgttttttttgttttagcaatAGTCTAGAATTTCTGCACTgactttaagctaattttattttattagcttaGCAACAATGATTTATTCATATGGACTCAACCAGTTATGTATCAAACAAAGCATGTAACCCGACACATTTATTCTTTTGACATAATTAGGCAATGATTCTTAGAGATGCATggctataaataaaatacaagactacaattttttttgtctgagtatttattaaaataaatttacttttAAGGTTGGCCgaacagtggctcaatggttagcactgtagcctcacagcaaggtcactggtttcagTCCCagttgagtcagttggcatttctgcgtggagtttgcatgttctccccatgttggtgcgAGTTTCCTTGCTCCGACttgctccacagtccaaacacatgcactataggggaattgaataagctaaattggctgtagtttatacggaattagttggcggttcattacgttgtggcgacccctgataacaaagggactaagccgaaagaaaatgaatgaatttttaaggtcacactttaaaataaaggtttCATTTGTCGAATGtagttactaacatgaacaaataatgaacaatgttTGAGCAGAATTTAATAAtcagtttaaaatttaaaattcacACTTGTTAAGATTACAATTTTAACCGTTTCTTAATCATTCACtgcacaaaaacatgcaaataacaaCACtactgaacaaaaaaataattaaatttgatCAATGATACATAACAATCCTCCAGAAGacactattaattttatattaatattaataaattaataaatgttttgcatAATTTGTTCCTTTTAGTAAATACATCCACATTAACTAATATAACCTATTTAAAAGTTTACACAACAATTTACAATATGTTTAAAGTTGATCAAAATGTTCATAATTACATGTTTAAAGTtgctaaaaattaaaaatgctaataattccTGTGTGTGTTAAAGTCGTCAAAAGTAAGAACAGAGACTCAGATTCAAAGAAATGAGCCTGGAAATGGATTAATTGTTGTCTTCAGCAAAGCTCTGGTTCCGTCTGAACAGAAGTGCTTTTTAACAATGTGAGCAGAATGAATTGGAATTTGACCTTGCAGATTAGTTTTGGCCTTGAAGGGTCTTATCAGCTTGTGCGAGACTATACAGATGTCCTCTTtaggaaataaagagaaaaaaactaaaccaaCATCACCAtcatctgctctccattaaaaaAAACTCAGAACAAAAATTAAAAGGAAATATTAGATACAATATAAAGCTATGAAAAAAAATGAGAGAGCACTTGTTAATtcagaaaatgtcatttttatggAAGTAGTATATATGGGATTTCGAAAATGCTGTTGATATTTTTCAGTGTCTAtaatgtctgataacatttcttctaAATTTTATTGTCAgagcattttttaaatcatttgtcAGAATAACCAAAGTTTTCATTCGTTGTGATTGCGAAAGAGAGATTTTCACACCAAAATGCTGACTTCATGACTCTTCTGAAGCTAAATACTGATGCTGtattatcttaaaaaaataacataaaccttttttatattcaaaaatgatctaaatcacatttttatttaaaatttggaagaaatgttatcacCAGTAGAGGGTTTAGTACAgaataaaaatcacattttaccCACTTAAATGGAAACAGAAAGAATCAGAGAATTTTCAAATGGCCTCTTTCAGGCCTttcacgatatatatatatacacacacacacacacacacatacatacacatatatatatatatatatatatatatatatatatatatatatatatacatacactgtatacacacacacacacacatatatatatatacatacacatatatatatatatacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatacat

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4139 No description available

Ensembl:

ensembl_id ENSDARG00000111625

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001150 True 5371 mRNA 0.37 2 52754085 52763447
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_000678 CABZ01021532.1 coding upstream 17960 52735484 ~ 52736125 (+)
XLOC_000677 osbp coding upstream 55022 52662203 ~ 52699063 (+)
XLOC_000676 slc44a1a coding upstream 101922 52632856 ~ 52652163 (+)
XLOC_000675 abca1a coding upstream 125678 52560549 ~ 52628407 (+)
XLOC_000674 tacr3l coding upstream 215568 52518176 ~ 52538517 (+)
XLOC_000680 smarca5 coding downstream 28992 52792439 ~ 52820954 (+)
XLOC_000681 NA coding downstream 44185 52807632 ~ 52807843 (+)
XLOC_000682 inpp4b coding downstream 165738 52929185 ~ 53225121 (+)
XLOC_000683 BX957281.1 coding downstream 458411 53221858 ~ 53271128 (+)
XLOC_000684 NA coding downstream 502953 53266400 ~ 53278288 (+)
XLOC_000673 BX323839.1 non-coding upstream 243329 52495043 ~ 52510756 (+)
XLOC_000667 NA non-coding upstream 385887 52363402 ~ 52368198 (+)
XLOC_000668 NA non-coding upstream 386508 52365030 ~ 52367577 (+)
XLOC_000666 LO017718.1 non-coding upstream 390978 52353162 ~ 52363107 (+)
XLOC_000665 NA non-coding upstream 407186 52345955 ~ 52346899 (+)
XLOC_000686 NA non-coding downstream 556712 53320159 ~ 53320674 (+)
XLOC_000687 NA non-coding downstream 557484 53320931 ~ 53321338 (+)
XLOC_000689 AL935166.1 non-coding downstream 601063 53364510 ~ 53368034 (+)

Expression

Expression of XLOC_000679(wu:fc75a09) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 12.
End of interactive chart.

Expression of XLOC_000679(wu:fc75a09) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Co-expression Network