XLOC_006790 (lgmn)


Basic Information

Item Value
gene id XLOC_006790
gene name lgmn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36037970 ~ 36050327 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013063
TAAATTGCAGAAATGAGCCCACAGACAGTAGCAGTTTTAGGTCTCGCCCTGAGCCTTGGGCTAGTTGTAAGTGGTTTTCCTGCGGAACAGCCAGAAAATGGGAAGCACTGGGTCGTCATTGTGGCTGGGTCAAATGGCTGGTACAATTACAGACACCAGGCTGATGTGTGCCATGCGTATCAGATTGTCCATAAGAATGGGATTCCTGATGAGCAGATTGTTGTCATGATGTATGATGATCTTGCTGAGAGTCCTGAtaACCCTACAAAAGGAGTGGTCATAAACAGACCAAATGGATCAGATGTTTACAAAGGAGTGCTAAAGGACTACATTGGGGACgacgTCACTCCTGAGAACTTCCTGGCGGTGTTGAAAGGTGATGCTGCTAGTGTGAAAGGAGGATCTGGAAAAGTGCTGAAAAGCGGTCCGAATGatcatgtgtttgtgtatttcaCTGATCACGGAGCACCAGGTCTGCTGGCCTTCCCTAATGATGATCTCCATGTTGACGACCTGATGGATACCATCAAGTACATGCACAGCAACAACAAATACAAGAAGATGGTGTTTTACGTTGAGGCCTGTGAATCTGGCTCCATGATGAAACCTCTGCCTGTTGACATTAATGTTTACGCTACCACCGCTGCTAACCCTGATGAGTCCTCATACGCCTGCTACTACGACGAAGCCAGAGACACTTATCTGGGAGACTGGTACAGCGTCAACTGGATGGAGGACTCTGATGTAGAGGATCTGAGCAAAGAGACTTTGGCCAAACAGTTCAAGATCGTAAAGGCCAAAACCAACACCAGCCATGTGATGCAGTATGGAAACAAGacaCTGTCCCACATGAAGGTGATGGCATTCCAGGGTAGCTCAAAGGGTCTTGATAAGGCAGTGGAGCCAGTGTCGTTGCCTGTGATCGCTGAACATGACCTCATGAGCAGCCCCGATGTGCCACTTGCCATCCTGAAGAGAAAACTGCAGAAGACCAATGATGTTGATGCTGTTGTTGGTTACCTGAATGAAATCCACGCTCATCTACAGGTGCGGGAGCTGCTTGGAAACACTATGCGTAAGATCGTGGAGCATGTTGTGCAGGACAAAGAGGAAGTGCAGGATTATCTGGATGGACGTTCAGACCTCACACAGTACAATTGTTACAAAACAGCCGTCAGACACTACAAGAAACACTGCTTCAACTGGCATGAGCAGAAGTTTGAATATGCTCTGAGACACCTGTATGCTCTAGTAAACCTCTGTGAGGGAGGATACCAGGCCCACAGAATCACTGCAGCCATGGACGATGTGTGTTACTTCAGGGAGTAGAAATGTGAACTTGAGCCACCGAGGATTTATTATGGATGAACTACACTTTGCACAAAAGAGTCTGACTGTGGGCAGAAATCAGTTTCATCACACACAGCTTTTGATCCTTttgaaaatgtttcttttttaaatgaggatttgcacttttaaaattattttatgtaatgttttacttttttctttcatattttgttttttaaaggaagCATAAACTCGAGAAAATCCAAACACATTTTCctgttaaacttttattttttagtttttttttaatcggaTGCCTCATAAGTGAAATCAAATGGAAAGTCTGCTTTAAAGTGACACGGCTACAGTGGCAAAGCTTGTTTTTGCACCTCAGTTACTGCCGACGTTAGTAAGAAATGCATTTTCAGAAACCAAAGCGTTTAAATGTCCAGTTGTACATGATGCTAATCTATTGCGTTAAAACAATTTCAAACAAACACTAGCTAGACACTATTTGCTACAGTATGTGTTGCActaagattttgtttttattttttttaagccgATGTTTTTTTAGGCTGATCTGCTTGTTTCCTGAGCCATGATGATCCCCTTTTCTCCCCCTATGTAGTAAAATCAAATGAGCTCTTCTTTGGTTATTAGCTAAATGTCTACCCATCAAACTAACCTGAAGTCTGTGGTCATACTTAAGAAGTGTCTTAAATAACTGAGCGCTGAATGAGAAGGTGTGTTTAGTGTCGGGCTGTGCTATTATGTCAAGTGGCCTCCGTTTAGAGCAAATTGAGGCCTGAAACTGAACTGAAGGGGGTGTAATGAATGACAAGTGTGTGCTGGAGTTAGGGAAATGAGTTTGCACTGACAACCACTGTGTGAAGCAAAACACTGAATGACTACATGTTTCCCTGTCAATGTATAATCTGTTAAGCAGTGAATTATTGGTTTATAAAAGGAATAATAAACACTGATGGAGTGGAATTTGTTGAATTGGTCTcttcattttctttaaatataactttaatgttttattaatgttgtaAATTGTGgttgtgaaaatgttcatgtaaACTACGtaaacaaaatagtattttgctTCACTTTTAGAACAAACAAGTTATAAAACCTGtcacttttcaaaaggtacaattaAAGGTACTTATTAATGCCtaaaaggtacaaatgtgtacctcaaaggtacaaaagtgtaccctaaaggttTAAGATCATAGCAATTAAGCTATAAAAAGATGAAAGTTACAGCCTCTGGggcagttttttttacatttttatttctgagtgttttattagtaaaaaataatgttcagaattaaaaaaaaaaaattattgatttttaattaaatattacttttttttagcaACACATAAATCAGTGAAACAtggctttaaagggcacctatgattaaaaaaaaacatcttttgtaagctgtttggacagaactgtgtaagtatagtgtgtccaccgtcatattggagtgatataaagacaataaaggttaaaataggatccaaatccctcccgttTTGAGGCCGACTGCAactggtttccccgcccactgaattgattgacagccgcatattagTATGTCTCCGTAATAACCAGTATAATCCAAGCAGCAACCTCCCACTCTCCCTCAGGAAGcaaatatggaagtaactgaaactgcaatttatcgaaattccgctagtcctggctccatatggaGCAAGTATctaaatggccaactttacagcagaaaaaaaggtgtttacagcctggtacaaagaacaattTTGGTTCATTTAGCTGATATTACCCTTCATGGCAACTGTGAGGGGGGTAAATTTATTTAtgactcatccgtttcctttatattaggttatattaagtctgcataattaagggcgtggccacttgagtgacagctaggtctcgctggtcgccgtcactctacctcagctgactccggcaGATCATTAAtaagcattaaaggcacaggcagcaaaaacagctacattgtgttcaaagcagaaaataccaatattctgaaaggtttaataaataatctgactggtgttttgagctgaaaccttacagacacattctggagacacaaaaaagACTAATCTAAAATCTCTAAAAAAGGATAAaattggtgccctttaaatttaacttttgtgtctttttctttctGAGTAAAAATAGTGTCAGACGCATTTAGATAAAGAATACTTTTATCATTTGATTTTGTTCAGGCATCAAAACAGGCTGTACAGTCGTTGACCCAAGtatgtttaatgtaatttaaataattattgagttcattttacaaaacaagctgctgaaaagcaaatccattcaATATGTAATCTTTCagatctgatttttatttttattttgttgatttcTTAGGGAATATTAGTTCAGCCATTTTGTTCAAATCATTTTAGATACTTTTCCCTCTCCAGTTTCTCGTGTTCTTCTTTTTGCTTTTCAGCTGTGATCTTGAATGAAGTCTTACGATCTACATATTAACAGTTTCTGGAAAACCCAACAAAATGCACATTCTGCGTGTTGTTATGTAACACCAACAAATTAGAAATGTCCAGCATATTATCTATTGCACTCCTTTGATATTTCTGTGTATTTTGTCTTCTTTGCTCAGATAAATTATATGTACACCAC
>TCONS_00013064
CCGTCTTCACAGTTTGTAATAAAGCGTCGCGTCGCTGCTGTACAGGCAGCTCGGGCGTCGTGTACAGTAGCTGTAAATTGCAGAAATGAGCCCACAGACAGTAGCAGTTTTAGGTCTCGCCCTGAGCCTTGGGCTAGTTGTAAGTGGTTTTCCTGCGGAACAGCCAGAAAATGGGAAGCACTGGGTCGTCATTGTGGCTGGGTCAAATGGCTGGTACAATTACAGACACCAGGCTGATGTGTGCCATGCGTATCAGATTGTCCATAAGAATGGGATTCCTGATGAGCAGATTGTTGTCATGATGTATGATGATCTTGCTGAGAGTCCTGAtaACCCTACAAAAGGAGTGGTCATAAACAGACCAAATGGATCAGATGTTTACAAAGGAGTGCTAAAGGACTACATTGGGGACgacgTCACTCCTGAGAACTTCCTGGCGGTGTTGAAAGGTGATGCTGCTAGTGTGAAAGGAGGATCTGGAAAAGTGCTGAAAAGCGGTCCGAATGatcatgtgtttgtgtatttcaCTGATCACGGAGCACCAGGTCTGCTGGCCTTCCCTAATGATGATCTCCATGTTGACGACCTGATGGATACCATCAAGTACATGCACAGCAACAACAAATACAAGAAGATGGTGTTTTACGTTGAGGCCTGTGAATCTGGCTCCATGATGAAACCTCTGCCTGTTGACATTAATGTTTACGCTACCACCGCTGCTAACCCTGATGAGTCCTCATACGCCTGCTACTACGACGAAGCCAGAGACACTTATCTGGGAGACTGGTACAGCGTCAACTGGATGGAGGACTCTGATGTAGAGGATCTGAGCAAAGAGACTTTGGCCAAACAGTTCAAGATCGTAAAGGCCAAAACCAACACCAGCCATGTGATGCAGTATGGAAACAAGacaCTGTCCCACATGAAGGTGATGGCATTCCAGGGTAGCTCAAAGGGTCTTGATAAGGCAGTGGAGCCAGTGTCGTTGCCTGTGATCGCTGAACATGACCTCATGAGCAGCCCCGATGTGCCACTTGCCATCCTGAAGAGAAAACTGCAGAAGACCAATGATGTTGATGCTGTTGTTGGTTACCTGAATGAAATCCACGCTCATCTACAGGTGCGGGAGCTGCTTGGAAACACTATGCGTAAGATCGTGGAGCATGTTGTGCAGGACAAAGAGGAAGTGCAGGATTATCTGGATGGACGTTCAGACCTCACACAGTACAATTGTTACAAAACAGCCGTCAGACACTACAAGAAACACTGCTTCAACTGGCATGAGCAGAAGTTTGAATATGCTCTGAGACACCTGTATGCTCTAGTAAACCTCTGTGAGGGAGGATACCAGGCCCACAGAATCACTGCAGCCATGGACGATGTGTGTTACTTCAGGGAGTAGAAATGTGAACTTGAGCCACCGAGGATTTATTATGGATGAACTACACTTTGCACAAAAGAGTCTGACTGTGGGCAGAAATCAGTTTCATCACACACAGCTTTTGATCCTTttgaaaatgtttcttttttaaatgaggatttgcacttttaaaattattttatgtaatgttttacttttttctttcatattttgttttttaaaggaagCATAAACTCGAGAAAATCCAAACACATTTTCctgttaaacttttattttttagtttttttttaatcggaTGCCTCATAAGTGAAATCAAATGGAAAGTCTGCTTTAAAGTGACACGGCTACAGTGGCAAAGCTTGTTTTTGCACCTCAGTTACTGCCGACGTTAGTAAGAAATGCATTTTCAGAAACCAAAGCGTTTAAATGTCCAGTTGTACATGATGCTAATCTATTGCGTTAAAACAATTTCAAACAAACACTAGCTAGACACTATTTGCTACAGTATGTGTTGCActaagattttgtttttattttttttaagccgATGTTTTTTTAGGCTGATCTGCTTGTTTCCTGAGCCATGATGATCCCCTTTTCTCCCCCTATGTAGTAAAATCAAATGAGCTCTTCTTTGGTTATTAGCTAAATGTCTACCCATCAAACTAACCTGAAGTCTGTGGTCATACTTAAGAAGTGTCTTAAATAACTGAGCGCTGAATGAGAAGGTGTGTTTAGTGTCGGGCTGTGCTATTATGTCAAGTGGCCTCCGTTTAGAGCAAATTGAGGCCTGAAACTGAACTGAAGGGGGTGTAATGAATGACAAGTGTGTGCTGGAGTTAGGGAAATGAGTTTGCACTGACAACCACTGTGTGAAGCAAAACACTGAATGACTACATGTTTCCCTGTCAATGTATAATCTGTTAAGCAGTGAATTATTGGTTTATAAAAGGAATAATAAACACTGATGGAGTGGA
>TCONS_00013065
CGTCGCGTCGCTGCTGTACAGGCAGCTCGGGCGTCGTGTACAGTAGCTGTAAATTGCAGAAATGAGCCCACAGACAGTAGCAGTTTTAGGTCTCGCCCTGAGCCTTGGGCTAGTTGTAAGTGGTTTTCCTGCGGAACAGCCAGAAAATGGGAAGCACTGGGTCGTCATTGTGGCTGGGTCAAATGGCTGGTACAATTACAGACACCAGGCTGATGTGTGCCATGCGTATCAGATTGTCCATAAGAATGGGATTCCTGATGAGCAGATTGTTGTCATGATGTATGATGATCTTGCTGAGAGTCCTGATTCTTGCTCCTTAAAGAgagcatgtttttgtgtgtttagtaACCCTACAAAAGGAGTGGTCATAAACAGACCAAATGGATCAGATGTTTACAAAGGAGTGCTAAAGGACTACATTGGGGACgacgTCACTCCTGAGAACTTCCTGGCGGTGTTGAAAGGTGATGCTGCTAGTGTGAAAGGAGGATCTGGAAAAGTGCTGAAAAGCGGTCCGAATGatcatgtgtttgtgtatttcaCTGATCACGGAGCACCAGGTCTGCTGGCCTTCCCTAATGATGATCTCCATGTTGACGACCTGATGGATACCATCAAGTACATGCACAGCAACAACAAATACAAGAAGATGGTGTTTTACGTTGAGGCCTGTGAATCTGGCTCCATGATGAAACCTCTGCCTGTTGACATTAATGTTTACGCTACCACCGCTGCTAACCCTGATGAGTCCTCATACGCCTGCTACTACGACGAAGCCAGAGACACTTATCTGGGAGACTGGTACAGCGTCAACTGGATGGA

Function

symbol description
lgmn Predicted to enable cysteine-type endopeptidase activity. Acts upstream of or within several processes, including axon regeneration; negative regulation of bone mineralization; and negative regulation of osteoblast differentiation. Is expressed in several structures, including cardiovascular system; immature eye; mesoderm; nervous system; and pleuroperitoneal region. Orthologous to human LGMN (legumain).

GO:

id name namespace
GO:0006624 vacuolar protein processing biological_process
GO:0030502 negative regulation of bone mineralization biological_process
GO:0042246 tissue regeneration biological_process
GO:0031103 axon regeneration biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0045668 negative regulation of osteoblast differentiation biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko04142 Lysosome
ko04612 Antigen processing and presentation
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-021030-1 Predicted to enable cysteine-type endopeptidase activity. Acts upstream of or within several processes, including axon regeneration; negative regulation of bone mineralization; and negative regulation of osteoblast differentiation. Is expressed in several structures, including cardiovascular system; immature eye; mesoderm; nervous system; and pleuroperitoneal region. Orthologous to human LGMN (legumain).

Ensembl:

ensembl_id ENSDARG00000039150

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013063 False 3991 mRNA 0.39 13 36037970 36049008
TCONS_00013064 False 2358 mRNA 0.43 14 36039676 36050327
TCONS_00013065 True 822 mRNA 0.48 9 36045321 36050303

Neighbor

gene id symbol gene type direction distance location
XLOC_006789 si:dkey-157l19.2 coding downstream 3388 35995238 ~ 36034582 (-)
XLOC_006788 si:ch211-67f13.8 coding downstream 52198 35984621 ~ 35985772 (-)
XLOC_006787 si:ch211-67f13.8 coding downstream 53440 35983997 ~ 35984530 (-)
XLOC_006786 zgc:153911 coding downstream 60984 35974362 ~ 35976986 (-)
XLOC_006785 BX510990.1 coding downstream 75504 35962350 ~ 35962466 (-)
XLOC_006791 pcnx1 coding upstream 3658 36053985 ~ 36134401 (-)
XLOC_006792 med6 coding upstream 84795 36135122 ~ 36141486 (-)
XLOC_006793 map3k9 coding upstream 114312 36164639 ~ 36184701 (-)
XLOC_006794 slc8a3 coding upstream 146451 36196778 ~ 36264861 (-)
XLOC_006795 cox16 coding upstream 261567 36311894 ~ 36319308 (-)
XLOC_006471 BX537274.2 misc downstream 25773065 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 35211745 825904 ~ 826225 (-)
XLOC_006784 NA non-coding downstream 112486 35925042 ~ 35925484 (-)
XLOC_006779 BX663524.1 non-coding downstream 445593 35592242 ~ 35592377 (-)
XLOC_006775 CU138575.1 non-coding downstream 667286 35370569 ~ 35370684 (-)
XLOC_006774 NA non-coding downstream 748533 35205297 ~ 35289437 (-)
XLOC_006797 CR361558.1 non-coding upstream 348933 36399260 ~ 36399375 (-)
XLOC_006804 BX927407.1 non-coding upstream 537443 36587770 ~ 36612159 (-)
XLOC_006814 NA non-coding upstream 945306 36995633 ~ 36997760 (-)
XLOC_006815 NA non-coding upstream 959485 37009812 ~ 37012236 (-)
XLOC_006817 NA non-coding upstream 1059885 37110212 ~ 37110536 (-)

Expression


Co-expression Network