amacr (amacr)


Basic Information

Item Value
gene id amacr
gene name amacr
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4720756 ~ 4729360 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220714.1
TGAATTGGTATATCATTAAAACTACAACATCCACAATCCTGTGCGCATACGTCATAAACACGCGCCGTGCCGTTTGTTTCGAAGTGCAAAATTTAAAAGGTTTCATTATGGCTCTGGCAGGAGTGCGTGTAATAGAGCTTGCAGGATTGGCCCCTGCGCCCTTCTGTGGGATGATACTAGCGGACTTCGGTGCAAGAGTGATCCGGGTAGATCGGACAAAGGTGGAAATGACTGTAGATACTCAAGCCAGAGGCAAACAATCAGTGGCCTTGAATTTGAAGAATCCCAAAGGTGTTGCTGTTTTGAAAAGACTGTGTGTTCAGTCAGATGTGGTTCTGGAGCCCTATCGTAAAGGTGTTATGGAAAAGATGGGATTAGGTCCTGAAGATTTACTAAAAGAGAACCCACGCCTGATTTACGCACGACTCACCGGCTACGGTCAGAGCGGGTCCTACGCCAAGGCTGCTGGGCATGATATCAACTACCTGGCCATGTCAGGGTTGCTGTCCATGCTTGGCCGACGCTCAGAGAAGCCCTATGCTCCATTGAATTTGGTGGCAGACTTTGCTGGAGGAGGTCTCATGTGTGCTTTTGGGATTGTGTTGGCTCTCCTGGAAAGAAGCAGGTCAGGACAAGGCCAGATCATTGATGCCAGCATGgtTGAAGGTGCAGCATATGTCGGCTCCTTCATGTGGAAATCCCGTAACCTTGGCCTGTGGAATCGTCCACGTGGAGAAAACTTGCTGGATAGTGGCGCTCCGTTCTATGACACGTACCGTACATCTGATGGAAAGTACATGGCAGTGGGGGCAATTGAGCCTCAGTTCTATCAACAGCTTATTCAAGGTTTGGGCTTGGATGATGCTGACCTGCCTGCACAAATGAGTGTATCGGATTGGCCACAGCTCAGGCAAACATTCACCCTGGTGTTTGCCAGCAAGACGCAGGAGGAGTGGAGTCAGATCTTCGATGGGACAGATGCCTGTGTCACCCCTGTGCTGTCACTGGATGAGGTACTCTCTCACCCCCACAACCGGGCGCGGGGGTCATTCTTTAAGGACTCTCAGGGGGAAATAAGCCCTCGTCCTGCACCCGTCCTGTCCCGATCCCCTGCGGAGCCCTGTCACTCCCGGGACCCCTTCATCGGAGAGCACACTCGCTCCGTGCTGGAGGAGTACGGGTTTGAGCAAGCACATATAGACCAGCTCCTATCTGCCGGTATTGTGGAGTGTAACAAAGCTAAAGCTCGTCTATAAATCAAAGACTCTGATTGAAGAATCATTAAACTTCGTGGCCAGTGATGCAGGACTGGAATCTGAGAACTCGAACTCCTGTGTCTCATTGAGTGTGAGGAGGCATTTCAGAACAAAATGACTCTCTCTTGGGAATCACCGGGTGCTGCAGTGGAAGTGGATGAAATTATCTTAGGCTTATATaacaaaatgtccaaaaaattCAACTCTCATTTGTAATTGCTGCACAGAAGGCAAAGTGGGATTTAATTAAAGCCTATATTGCAAATATTCTGTATCTTAACGTCCTTAACAtcatcagtttaaaaaaaaggatatttaactcaacttttttttaatactgttataaattaataatagtattgTTGAGGGAATTTTATTTGTAGTTGATTAAAGTGTACCACATCTGGTTGTGAATAGTAATTGCCTTGAGAGGAATGGATGAATGTGAGTCATAGACTGATTAACTAAGTGAAATATTTGCCTTTGCCTAATTATTGGGGAGCGCTGATGAGCTAAGATAATGGTATTAGGATAAAACCAgtcaatgatttattttaagatgaagTTTTCTGTCATGGTATCACTAGTATAATGTAACACTTGATGAACTTGGTAGTAGTCTTTATTTTGATACAGAAGGGAGGGAGGATCAAAAAGCTCTTGGAATTcatcaaaatatgtatatataaagtaattaatgacagaatttacattttacattactttttacattACTATGCCTTTAAGTCCAATTCATATTATACCAAAAGATGCAGACCAACAGCAACAGACAAATTTGTTGGGTTTTGTTGGATCAGTGTGCTACCCCTGTCTACATCTCTTTGGACTAGATTGGAccgaaaatattatatttgtgtatttcagGTCTTGGAATGTCTGAGAAGTTGTAATGTAATCTGGTGACCGTCAGCATTGGCTCTGCTTCTGTTGGTTCTGTGTAAATTGCGTGTTATATGCTCCTCAGatctatattaaaaacattagtgtaatttaaatgaactgtaatctcccaacattatattatattttataatgaagtGCTAGATCATGTGA

Function

symbol description
amacr Predicted to enable CoA-transferase activity. Human ortholog(s) of this gene implicated in alpha-methylacyl-CoA racemase deficiency; congenital bile acid synthesis defect 4; and urinary bladder cancer. Orthologous to human AMACR (alpha-methylacyl-CoA racemase).

NR:

description
alpha-methylacyl-CoA racemase isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01796 E5.1.99.4, AMACR, mcr; alpha-methylacyl-CoA racemase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220714.1 True 2330 mRNA 0.43 6 4720756 4729360

Neighbor

gene id symbol gene type direction distance location
hpse hpse coding upstream 15980 4698726 ~ 4704776 (+)
helq helq,LOC107681193,LOC107591711 coding upstream 22174 4692192 ~ 4698582 (+)
abraxas1 fam175a,LOC107681177,LOC107589234,LOC107703595,LOC107591751,LOC107722832 coding upstream 30417 4686916 ~ 4690339 (+)
nkx6.1 nkx6-1,nkx6.1,LOC107706438,LOC107700773,LOC107722812,LOC107703597,LOC107591753 coding upstream 132298 4585890 ~ 4588458 (+)
LOC122327011 NA coding upstream 137599 4583099 ~ 4583157 (+)
LOC122326163 LOC107681122,LOC107589283,LOC107706442 coding downstream 25266 4754626 ~ 4757400 (+)
rai14 rai14,LOC107681156,LOC107706485,LOC107589239,LOC107750373,LOC107703593,LOC107591710 coding downstream 31805 4761165 ~ 4793419 (+)
fgf10a fgf10a,LOC107706443,LOC107589284,LOC107750480,LOC107703510,LOC107591746,LOC107681114 coding downstream 82138 4811498 ~ 4826764 (+)
ccdc80l2 ccdc80l2,LOC107706489,LOC107589242,LOC107681168,LOC107750362 coding downstream 164667 4894027 ~ 4898585 (+)
si:dkey-247m21.3 LOC107706496,LOC107681108,LOC107589286,LOC107591744,LOC107703507,LOC107708508 coding downstream 347196 5076556 ~ 5097197 (+)
G143751 NA non-coding upstream 131604 4588726 ~ 4589152 (+)
LOC122326582 NA non-coding upstream 142628 4563334 ~ 4578128 (+)
G143745 NA non-coding upstream 168288 4551421 ~ 4552468 (+)
G143717 NA non-coding upstream 634230 4075527 ~ 4086526 (+)
LOC122326258 NA non-coding upstream 799037 3919733 ~ 3921719 (+)
G143826 NA non-coding downstream 21857 4751217 ~ 4751510 (+)
G143827 NA non-coding downstream 22547 4751907 ~ 4752259 (+)
G143872 NA non-coding downstream 70742 4800102 ~ 4862403 (+)
G143887 NA non-coding downstream 161778 4891138 ~ 4893087 (+)
LOC122326855 NA non-coding downstream 305570 5034930 ~ 5067800 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other upstream 11315 4705157 ~ 4709441 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 196576 4511926 ~ 4524180 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other upstream 334544 4132436 ~ 4386212 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other upstream 506984 4106801 ~ 4213772 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other upstream 1016359 3701429 ~ 3704397 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other downstream 1243 4730603 ~ 4745266 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other downstream 170130 4899490 ~ 4911816 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other downstream 218224 4947584 ~ 5028046 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 771743 5501103 ~ 5506433 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other downstream 772673 5502033 ~ 5517936 (+)

Expression


Co-expression Network