bud13 (si:dkeyp-69c1.6,LOC107703532,LOC107718963)


Basic Information

Item Value
gene id bud13
gene name si:dkeyp-69c1.6,LOC107703532,LOC107718963
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 6524949 ~ 6528555 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220759.1
GACGTAATACATAAACAAGATGGCTACTTCCACAGGCTTAAGCAAAAGTGCTGCACTCTCTAAAGCAGATTACCTTAAACGGTATTTATCTAATGATGAAGCTGGCAAGAAGTCTAAAGAAAAGAAGCTTAAGAAGAAACGACCGAAACCCACTGGAAGAGGAATGAAGATTGTCGACGACGACATTGATTGGAGGCAACTGGCAGCTCAGGACgaagaagaaaaaggaggagaagaagaagaggaggatgaggcGCCTGTGATTGCAGAAGTGATAGATGAACGGCCAGAGGAGATCAAGCAGCTCGAGGCGTTCGGAACTGGCAAGTGGAAAGTGATTGGCGCAACAGAGAGAGATCCCCAAGAAACCCAGGACTCTCTATTAGATGAAAGTTTGGACCCTGATCATAGAGTGCGGCACGACTCACCGGAGACTTCTCCTGGACGGAGGGTACGGCACGATTCCCCTGACCTCTCACCCAAGAGGACTCGGCACGACTCACCAGATCTCTCACCCCAGAGAAGTCGTCGTCATGACTCGCCAGATCTCTCGCCTCAAAGACACAGAGCCGAGAACAAAAACAGACGGCATGATTCCTCATCACCTTCCCCTCCGAGAAAGAGCCACAAGAGCTCTCCCTCCAGAACTCAAAGGCCGCACGATAAAGAGTCTCCGcacagaaaaaagacaaaagctgcCTCCTCAGATGACCTTTCGCCGCCCAGGAGACGAGTACGAAAAGACAAAGGCTCAGACTCCGATCAGTCCCCACCACGCAGACGTCCTCATGGACGACGGGGCTCAGACTCCGATCTGTCTCCACCCAGAAAGAGAGGTTCAGATTCAGATCTCTCTCCTCCCAGGAAGAGGCGACAGGGGGGACGTGGGTCGGACTCGGACCTGTCTCCACCGCGGAGGACACACTCTCCTGATGCACAGGCAgcaCCTCGAATGCTGTCTGGTGGAGCTTCAGGGCTCGTCTCTGTCGACATTTTgaggaaagaaaaggaagaaataCGCAAAAGGGAAAAGCGCAACCAGCCTCTTGAAGAGGCATCAAGAAATGCACAGACAATATTTCGAGACAAATTAGGTAGGACGCGTGACATTGAATCAGAAAGAGCCGAGAAAAGCAGACAAGCAGGAGAAAAAGCAGAGAAGGATGAAAAATATGCGCAGTGGGGAAAAGGGCTTGCTCAGGAAGAAATGCAGCAGCAGAACTTGGTCGATGCCATGCGGGAGGCTCAGAAGCCGCTAGCGAGACACATTGACGATGAAGACCTCGATCAGATGCTGAGGGAgcaagagagggagggagaccCAATGGCTGCCATGCTTCgcaaaaagaaagacaaaaatgctaaattaaaaggAATCAAAGAAAAACCGCGTTACAAAGGTCCACCTCCACCTCCGAACCGTTTTAACATCTTGCCAGGCTATCGCTGGGATGGAGTTGACAGGTCCAATGGTTTTGAGCAGAAGCGGTACAGCAGGATAGCCGATAAGAAAGCTGTCCAGGAGATGGCATACAAGTGGAGTGTGGAGGACATGTAGATCCAGATGTGTTTATAGAGATGACTGGCATTAGTACAGTTCACGCTGCAAAAACCAAGATGTTTGGGGGCAGTTATCGGTCCTACTGTATACAAGAAATGTTccttattaaatgttaatttttaacaaatccCGATTTTCATCAGCACCATTTCTAAGCCAACAATTTGATTTAAGAGAACAAATTTTAGACAGACTAGATGAcactattgttttctttattttatttttttgtacccGAATTCCAACTGTTCTACTTAAGTGAAAGTAAaatttttctgaatatttcaaa

Function

NR:

description
BUD13 homolog

GO: NA

KEGG:

id description
K13106 BUD13, CWC26; pre-mRNA-splicing factor CWC26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220759.1 True 1850 mRNA 0.48 11 6524949 6528555

Neighbor

gene id symbol gene type direction distance location
LOC122326078 LOC107718966,LOC107551640,LOC107703534,LOC566907 coding upstream 9070 6513516 ~ 6515879 (+)
LOC122326080 LOC107719011,LOC107548127,LOC107681113,LOC107706467,LOC107551638 coding upstream 15310 6507266 ~ 6509639 (+)
chek1 LOC107548125,LOC107681196,LOC107706535,LOC107551636,LOC107719013,LOC107703487 coding upstream 64012 6456674 ~ 6460937 (+)
capslb capslb,LOC107706465,LOC107548122,LOC107682731 coding upstream 126644 6395659 ~ 6398305 (+)
lmbrd2b lmbrd2b,LOC107681180,LOC107548170,LOC107551632,LOC107703539 coding upstream 129335 6386242 ~ 6395614 (+)
arhgap42a arhgap42,LOC107703530,LOC107551641,LOC107718960 coding downstream 17516 6546071 ~ 6568023 (+)
birc2 birc2,LOC107703529,LOC107731450,LOC107718959,LOC107551643,LOC107548174,LOC107681145 coding downstream 57158 6585713 ~ 6593962 (+)
ddias LOC107731438,LOC107681101,LOC107603284,LOC107718991 coding downstream 79198 6607753 ~ 6610753 (+)
pcf11 LOC107681148,LOC107731451,LOC107548175,LOC107718956,LOC107551645,LOC107703528 coding downstream 82448 6611003 ~ 6620143 (+)
alg8 alg8,LOC107731443,LOC107719005,LOC107703477,LOC107548176,LOC107551646 coding downstream 96376 6624931 ~ 6628770 (+)
G144308 LOC107706534,LOC107548126,LOC107681195,LOC107703486,LOC107719012,LOC107551634 non-coding upstream 62016 6462650 ~ 6462933 (+)
G144212 NA non-coding upstream 462269 6062424 ~ 6062680 (+)
G144157 nkx6.1,nkx6-1,LOC107703597,LOC107700773,LOC107706438,LOC107722812 non-coding upstream 594064 5929769 ~ 5930885 (+)
LOC122326140 NA non-coding upstream 730345 5792864 ~ 5794604 (+)
G144130 NA non-coding upstream 818114 5705540 ~ 5706835 (+)
G144329 NA non-coding downstream 3485 6532040 ~ 6533579 (+)
G144347 LOC107731449,LOC107681146 non-coding downstream 76926 6605481 ~ 6606030 (+)
G144348 NA non-coding downstream 78292 6606847 ~ 6607346 (+)
G144353 NA non-coding downstream 93909 6622464 ~ 6623576 (+)
G144351 NA non-coding downstream 108568 6637123 ~ 7018763 (+)
G144152 NA other upstream 675896 5847941 ~ 5849053 (+)
LOC122326980 tnksa,LOC107706493,LOC107681059,LOC107589272,LOC107708542,LOC107703465,LOC103369208 other upstream 725247 5794762 ~ 5799702 (+)
LOC122326918 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 other upstream 783044 5735913 ~ 5741905 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other upstream 789812 5732440 ~ 5735137 (+)
G144077 NA other upstream 1014203 5508665 ~ 5510746 (+)
G144330 NA other downstream 5545 6534100 ~ 6535794 (+)
cfap300 si:rp71-1p14.7,cunh11orf70,LOC107731447,LOC107548131,LOC107681129 other downstream 54191 6582746 ~ 6585034 (+)
anapc13 anapc13,anc13,LOC107756075,LOC107693524,LOC107561055 other downstream 1378909 7907464 ~ 7909027 (+)
LOC122326775 si:dkey-183i3.9,LOC107715278,LOC107669329 other downstream 1679248 8207803 ~ 8211125 (+)
si:dkey-183i3.6 NA other downstream 1688420 8216975 ~ 8221572 (+)

Expression


Co-expression Network