LOC122326080 (LOC107719011,LOC107548127,LOC107681113,LOC107706467,LOC107551638)


Basic Information

Item Value
gene id LOC122326080
gene name LOC107719011,LOC107548127,LOC107681113,LOC107706467,LOC107551638
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 6507266 ~ 6509639 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220767.1
ACAAaccatttttcttctttcctctcTCGAATTCCCTCTGCTTCTTCTCCTTCCACTTTCCACAGAGCTGAAGCTTCACGAACCACTGGAAAGGGTGTCCTGCTAAATGAAAAACACCACAGACTGGGATTAAAACAGCACCACCATAAAGCCTCTGAAAGATGTGGTGGTCTGAGGCGTTGCATGAGTGCAGCACAGAAGGGAGGGGCTGCTGCAGTCTTCTGCAGTGCAGTGCTTCACGCCGTTAGCTGAGATGCTATGTGAGGCAGTTAGGTGGAGCCGCAgcgctgttgttgttgtctgaAGAGCGCAGTTTCATGGATGGCCCGCATAGCCGACGacactaaacattttaaaatgcagAGATTTGCAATGAACACATTTAACTCTTTGTTTGGGTGGATTCTTGTTTTGGGAGTTCTGATGATCCCAGTGTTGTGTCAGGATGAAGAGAGTGTAATTACAGTATGCCAAGAAGAAGATAATGACCTCAGAGTGGACTGTCTTCTGGAGCCCAGACCCAACTACCACACAGACTATGAGTTCTCCATGTCCAAAGGCCAAAAGGAGGTCATCATAAACACCAACATCTCTGGCATCATGCCTGAACCCAAGTTCAGACACAACACGTTTGTGACGGAGCTTGAGCCATACGGATTCAGGCTGACCATCATGAGCTTCACCGTCACTGAGAATACAACATTCATCTGTAAAGTAACCAAGATCCAGAAGACTCTGTTTGTTGAACTGGACACCATCGAGCCCTGCTCTGCCATCAGCGTGTTTCTGCTGGGTTATCCTTGGCTCAGTCTTCTGGTTCCATGCATCTTACAGCTATCTTACAGCTAAACAGTGAGCTATGCCGTtatattagtataaataaatcatgccttTACTGTGAAGTAAGTGCCGGTTGCTGCCTTTATGAAggtatttatttcctttatgCTTTTTAACACGTCTACCCAAAGCACAACTGAAGACATGTCATGTGCGTAATAAGTTAAAGGATTTCTAAGATTCTTGACTGctattataaaagttatgacaaGCATTTGTACTGCAACAGTGCTATCAATGCTTTCAATGAAATGCACCATTAACATCTTGCATTCAGTgtgtagataaataaataaatcccatAATTTATTGCCTTAATTATGCTTTTCTCAACACTTCGAAAATAATTCTAAACAATTTGTTACCCtcacatttcatttgtttaattttgcatAGTTGCACATTGTTTAATGTCTGTATGaaagaacaaatattttatcGATATATAAGGTGTTTTAATTTGATCAGTACTTCTGTTTTAAAAACGCTATTAtcatgttataaaatgtatctttaataaaaatctgtcaCTGGTG
>XM_043220768.1
GGAGACAAaccatttttcttctttcctctcTCGAATTCCCTCTGCTTCTTCTCCTTCCACTTTCCACAGAGCTGAAGCTTCACGAACCACTGGAAAGGGTGTCCTGCTAAATGAAAAACACCACAGACTGGGATTAAAACAGCACCACCATAAAGCCTCTGAAAGAGATTTGCAATGAACACATTTAACTCTTTGTTTGGGTGGATTCTTGTTTTGGGAGTTCTGATGATCCCAGTGTTGTGTCAGGATGAAGAGAGTGTAATTACAGTATGCCAAGAAGAAGATAATGACCTCAGAGTGGACTGTCTTCTGGAGCCCAGACCCAACTACCACACAGACTATGAGTTCTCCATGTCCAAAGGCCAAAAGGAGGTCATCATAAACACCAACATCTCTGGCATCATGCCTGAACCCAAGTTCAGACACAACACGTTTGTGACGGAGCTTGAGCCATACGGATTCAGGCTGACCATCATGAGCTTCACCGTCACTGAGAATACAACATTCATCTGTAAAGTAACCAAGATCCAGAAGACTCTGTTTGTTGAACTGGACACCATCGAGCCCTGCTCTGCCATCAGCGTGTTTCTGCTGGGTTATCCTTGGCTCAGTCTTCTGGTTCCATGCATCTTACAGCTATCTTACAGCTAAACAGTGAGCTATGCCGTtatattagtataaataaatcatgccttTACTGTGAAGTAAGTGCCGGTTGCTGCCTTTATGAAggtatttatttcctttatgCTTTTTAACACGTCTACCCAAAGCACAACTGAAGACATGTCATGTGCGTAATAAGTTAAAGGATTTCTAAGATTCTTGACTGctattataaaagttatgacaaGCATTTGTACTGCAACAGTGCTATCAATGCTTTCAATGAAATGCACCATTAACATCTTGCATTCAGTgtgtagataaataaataaatcccatAATTTATTGCCTTAATTATGCTTTTCTCAACACTTCGAAAATAATTCTAAACAATTTGTTACCCtcacatttcatttgtttaattttgcatAGTTGCACATTGTTTAATGTCTGTATGaaagaacaaatattttatcGATATATAAGGTGTTTTAATTTGATCAGTACTTCTGTTTTAAAAACGCTATTAtcatgttataaaatgtatctttaataaaaatctgtcaCTGGTG

Function

NR:

description
PREDICTED: thy-1 membrane glycoprotein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220767.1 True 1376 mRNA 0.41 5 6507270 6509639
XM_043220768.1 False 1178 mRNA 0.39 4 6507266 6509639

Neighbor

gene id symbol gene type direction distance location
chek1 LOC107548125,LOC107681196,LOC107706535,LOC107551636,LOC107719013,LOC107703487 coding upstream 46329 6456674 ~ 6460937 (+)
capslb capslb,LOC107706465,LOC107548122,LOC107682731 coding upstream 108961 6395659 ~ 6398305 (+)
lmbrd2b lmbrd2b,LOC107681180,LOC107548170,LOC107551632,LOC107703539 coding upstream 111652 6386242 ~ 6395614 (+)
nadk2 nadk2,LOC107681150,LOC107548165,LOC107703540,LOC107551628 coding upstream 136725 6363254 ~ 6370541 (+)
myo7ab myo7a,myo7ab,LOC107706532,LOC107681153,LOC107718980 coding upstream 153501 6329293 ~ 6353765 (+)
LOC122326078 LOC107718966,LOC107551640,LOC107703534,LOC566907 coding downstream 3877 6513516 ~ 6515879 (+)
bud13 si:dkeyp-69c1.6,LOC107703532,LOC107718963 coding downstream 15310 6524949 ~ 6528555 (+)
arhgap42a arhgap42,LOC107703530,LOC107551641,LOC107718960 coding downstream 36432 6546071 ~ 6568023 (+)
birc2 birc2,LOC107703529,LOC107731450,LOC107718959,LOC107551643,LOC107548174,LOC107681145 coding downstream 76074 6585713 ~ 6593962 (+)
ddias LOC107731438,LOC107681101,LOC107603284,LOC107718991 coding downstream 98114 6607753 ~ 6610753 (+)
G144308 LOC107706534,LOC107548126,LOC107681195,LOC107703486,LOC107719012,LOC107551634 non-coding upstream 44333 6462650 ~ 6462933 (+)
G144212 NA non-coding upstream 444586 6062424 ~ 6062680 (+)
G144157 nkx6.1,nkx6-1,LOC107703597,LOC107700773,LOC107706438,LOC107722812 non-coding upstream 576381 5929769 ~ 5930885 (+)
LOC122326140 NA non-coding upstream 712662 5792864 ~ 5794604 (+)
G144130 NA non-coding upstream 800431 5705540 ~ 5706835 (+)
G144329 NA non-coding downstream 22401 6532040 ~ 6533579 (+)
G144347 LOC107731449,LOC107681146 non-coding downstream 95842 6605481 ~ 6606030 (+)
G144348 NA non-coding downstream 97208 6606847 ~ 6607346 (+)
G144353 NA non-coding downstream 112825 6622464 ~ 6623576 (+)
G144351 NA non-coding downstream 127484 6637123 ~ 7018763 (+)
G144152 NA other upstream 658213 5847941 ~ 5849053 (+)
LOC122326980 tnksa,LOC107706493,LOC107681059,LOC107589272,LOC107708542,LOC107703465,LOC103369208 other upstream 707564 5794762 ~ 5799702 (+)
LOC122326918 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 other upstream 765361 5735913 ~ 5741905 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other upstream 772129 5732440 ~ 5735137 (+)
G144077 NA other upstream 996520 5508665 ~ 5510746 (+)
G144330 NA other downstream 24461 6534100 ~ 6535794 (+)
cfap300 si:rp71-1p14.7,cunh11orf70,LOC107731447,LOC107548131,LOC107681129 other downstream 73107 6582746 ~ 6585034 (+)
anapc13 anapc13,anc13,LOC107756075,LOC107693524,LOC107561055 other downstream 1397825 7907464 ~ 7909027 (+)
LOC122326775 si:dkey-183i3.9,LOC107715278,LOC107669329 other downstream 1698164 8207803 ~ 8211125 (+)
si:dkey-183i3.6 NA other downstream 1707336 8216975 ~ 8221572 (+)

Expression


Co-expression Network