pold3 (pold3,LOC107706527,LOC107548157,LOC107719019,LOC107573853)


Basic Information

Item Value
gene id pold3
gene name pold3,LOC107706527,LOC107548157,LOC107719019,LOC107573853
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5707122 ~ 5712844 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220773.1
ACGTGACCGGAAGTAAATACGGCTCGACAGCGGTTCCCGCGTTTGGCGACTCTTTCAATCACAAGCGTAAACTTGGAGTAGAAGCCAGGCTTTCCGGAAATGGATGACCTTTATTTAGACAATATCGACGAATTTGTGAATGATCAAAATAAGATcgtcACCTACAAATGGCTCAGTTTAACTCTTGGAGTCCACGTCAACAGAGCAAAACAAATGTTGTATCATTACCTGCAGCAGAAACGCAATGAAAGTTCAGGGACTCCACTTCATGCCACTTACCTTGTGTCTGGGAAGTGTGTTGAGAATGGTAGTACGTGCCATAAAGTGTCAGTAGTACGTGAGGACAAGCTTGATGctgTTAAAGCAAAGATGGCCGTGACTATCAGCGTGCATGTATACAGTGTGCAAAGAGCTGAGCTGAAGGATAGTTCACCACTTTACAATACAGATTATGATGCTGTTAAGGAGAACCTTAAAAACTGCAACAAGTACAGTGCGATACATTGTGCTGCGGCGGTCCCAGTATCATCTGCGGAGCTGCGGAGAGCTCAAGAGATGGTCCCTTCAGTAGAGAAGGAAATCAGTAAACCTGGCTTGAATGAAAACACTTCAGCTATCTCCAAACCTAGTGCTAAGCAGCCAGCAGGCATCATGGGAATGTTTGCAAGCAAAAATGCTTCTAAGAGCCAAGAATCCAGCAAGGAAGTAAAAACAGAGCAGAAAGACGATTCTTCTCTGGTTGAGAcatcaaaaagcaaaacagcctcCAAAGCAAACCCGATGAGTAACTTCTTTGGGAAGTCTTCCCAAAAAAAGGCTGATGAAAAACCTGACAAGAACATTAAAGAAGAGATGGACGGCAGCTCAACAACATCAGCTACTGCAAGTGTGAAACAGTCACGGATGTCTCCCAAAACTGAGATCGACATTAAAGAGGAACAATCCAAAGTGTCCAATGCACTGAAGGTTGAATCACAAGACACTCGGAATAAAACAAAGCGTCCTGAAGTTTTGGACAGTGACGATGAGAAAATGGAGAGCCAGCAGAAGAAGAGACGGCGGATAAAGAAGCCCCAGCCAGACAGCAGTGATGATGAGGTGGTCCCAGATTCTCCGCCTGTGCCCAGCGTACACACTCCCAGCCCTAAAAAACAAGTGAAGAGAGAGCCTGTTTTACACCAAGAAGAGAGCTCAGAGGtgaagaggaggaaaaggaggCGCGTGTTGAAGTCTCGCACATTTGTTGATGAAGACGGCGCCTTTGTGACCGAGAAGGGCTATGTGAGCGAGTCTTACTCTGAGAGTGAAGAGGAGCCTCAACCCAACAGTCAAGCCAAAGACACAAGATCACTCAAGCAgtcatttggaaaaaaagaagaagagaaaaaagaaaagagccaGAAGAAGACCTCTACCACTAACAAACCTACAAAACAGCCATCCATCATGGGATTTTTTCAGaagaaataacttttttgaTTCGTTCGTGGACTttgaaaggaatagttcacctggAAATGCAAACTGCCATTAATCTCTTccatcctcatgttgttctgtAGCATAGGTCTTTTTCTCTTCTTGAAGTGTCTATTAAAGAGGGGGAAAATCCACAGAAAGAAAAACGTAAAGATGAAGAAATAACACCTTCCTTTATTTTTGAGGTtgaatattcctttaagcacTTAATTTTCAGCAGTGACATTCTCCATGAACCACATTCCCATAAGTCTCCATTGCTACGTCGCTCTTCAGAGACATAAAAACAGGATATTTCTGCTTCTATACGAACAACACTGTGCAGACTGTCCTTTCAACTTCACATGCTGGATTTCAGTTCTGGGCCAGTTATGATGTCTGTTGTAGTAAGTGTATGATCCTGCTGATCGAGCCGATTTCTTTACTATAAGCTAAAGTGCATATGGCCGACCACAAATAATTCCCATACTGTAAAGTTTGTGAAGTCTTGTCTATTTTAGTATGTTTCTGgttaataaatcaaaagataaactgc

Function

symbol description
pold3 Predicted to contribute to DNA-directed DNA polymerase activity. Predicted to be involved in DNA strand elongation involved in DNA replication; DNA synthesis involved in UV-damage excision repair; and nucleotide-excision repair, DNA gap filling. Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of delta DNA polymerase complex. Orthologous to human POLD3 (DNA polymerase delta 3, accessory subunit).

NR:

description
DNA polymerase delta subunit 3 isoform X2

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K03504 POLD3; DNA polymerase delta subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220773.1 True 2014 mRNA 0.43 12 5707122 5712844

Neighbor

gene id symbol gene type direction distance location
LOC122326977 LOC107703495,LOC107718999,LOC107703444 coding upstream 4712 5701472 ~ 5702410 (+)
or61a1 LOC107703446 coding upstream 8777 5697407 ~ 5698345 (+)
LOC122326976 LOC107719001,LOC107703447,LOC107719002,LOC107573645,LOC107703448 coding upstream 11211 5694961 ~ 5695911 (+)
LOC122326975 or125-1,LOC107719002,LOC107573645,LOC107703448,LOC107719001,LOC107703447 coding upstream 19983 5686198 ~ 5687139 (+)
LOC122326974 or125-1,LOC107719002,LOC107573645,LOC107719001,LOC107703448,LOC107703447,LOC107573646 coding upstream 21054 5679070 ~ 5686068 (+)
LOC122326891 rpl17,LOC107722835,LOC107700774,LOC107703598 coding downstream 210147 5922991 ~ 5925662 (+)
LOC122327012 NA coding downstream 210576 5923420 ~ 5923495 (+)
LOC122327009 NA coding downstream 211445 5924289 ~ 5924361 (+)
LOC122327007 NA coding downstream 212622 5925466 ~ 5925527 (+)
LOC122326530 LOC107548171,LOC107706536,LOC107703536,LOC107718968,LOC107551635 coding downstream 304580 6017424 ~ 6035864 (+)
G144130 NA non-coding upstream 287 5705540 ~ 5706835 (+)
G144129 NA non-coding upstream 22025 5684828 ~ 5685097 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding upstream 74271 5632041 ~ 5632851 (+)
G144081 LOC107708509 non-coding upstream 167658 5538200 ~ 5539464 (+)
G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding upstream 332200 5366192 ~ 5374922 (+)
LOC122326140 NA non-coding downstream 80020 5792864 ~ 5794604 (+)
G144157 nkx6.1,nkx6-1,LOC107703597,LOC107700773,LOC107706438,LOC107722812 non-coding downstream 216925 5929769 ~ 5930885 (+)
G144212 NA non-coding downstream 349580 6062424 ~ 6062680 (+)
G144308 LOC107706534,LOC107548126,LOC107681195,LOC107703486,LOC107719012,LOC107551634 non-coding downstream 749806 6462650 ~ 6462933 (+)
G144317 LOC107703481,LOC107551613 non-coding downstream 784857 6497701 ~ 6537141 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other upstream 189186 5502033 ~ 5517936 (+)
G144077 NA other upstream 196376 5508665 ~ 5510746 (+)
sdhaf1 sdhaf1 other upstream 198729 5506546 ~ 5508393 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other upstream 200689 5501103 ~ 5506433 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 679076 4947584 ~ 5028046 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other downstream 19596 5732440 ~ 5735137 (+)
LOC122326918 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 other downstream 23069 5735913 ~ 5741905 (+)
LOC122326980 tnksa,LOC107706493,LOC107681059,LOC107589272,LOC107708542,LOC107703465,LOC103369208 other downstream 81918 5794762 ~ 5799702 (+)
G144152 NA other downstream 135097 5847941 ~ 5849053 (+)
G144330 NA other downstream 821256 6534100 ~ 6535794 (+)

Expression


Co-expression Network