idh3b (idh3b,LOC107737870,LOC107736889,LOC107548787)


Basic Information

Item Value
gene id idh3b
gene name idh3b,LOC107737870,LOC107736889,LOC107548787
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2793688 ~ 2800500 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220865.1
ATTAACCCTTGGAAGTTTACCGAGGACCCCTAGTGTTGGTCGAGAAGCACTACGAGTAAAGCTTGCATCCAGCAGGGGTCAGTAGAAGAAACGCACAGCTCAATGTTCCTAGTTCAGGAGGAAGATCACGGCGACCTTTTTCTTCCTCCCGTTTAATGCATGATGGCGGCCGCGTTGAGAGGAGGACTTGTAACATTGGCCAAGGGACTGAGTGGTGCCCGGCTGCAGCCGCTGTGTGCCCGCTCTCTGAGTTTGACCTCCAGTCAGAATGTTTCAGAGAGTCCCCCAGCGAGGGCTGACAGCACCTTTAAGGTCACGATGGTCCCTGGAGATGGAGTCGGGCCTGAGCTGATGACTGCTGTCAAAGAGGTTTTCAAGGCAGCTGATATTCCTGTGGAGTTTGAGGAGTTTCACTTGAGCGAGGTGCAGAACATGGCCAGCGAGGAGAAACTGGAAGAGGTGTTGTCCTCCATGAAGAACAACCGAGTCGCCATCAAGGGAAAGATTCACACTCCTATGGAGTACAAGGGTGAACTGGCTTCATATGAGATGAGACTGAGGAGAAAGCTGGACCTGTTTGCCAATGTGGTTCATGTGAACAGCCTGCCTGGATACAGCACCCGCCACAATAACCTGGATCTGGTCATCATACGAGAGCAGACGGAGGGAGAATACAGCTCTCTGGAGCATGAGAGTGTTTCGGGAGTGGTTGAGTGCCTGAAGATCATCACCAGGGAGAAATCTCGCCGTATCGCTAAATTTGCATTCGACTATGCCACCAAGAAAGGCCGCAGCAAAGTGACCGCTGTCCACAAAGCAAACATCATGAAACTCGGGGATGGTCTCTTCCTGCAGAGCTGTGCAGAAGTGGCTGAACTTTACCCCAAGATTAAATACGAAAACCTCATCATTGATAACTGTTGCATGCAGCTGGTGCAGAATCCTTATCAGTTTGATGTGTTAGTGATGCCAAATCTCTACGGCAACATCATCGATAACCTGGCAGCGGGGTTGGTGGGCGGAGCCGGCGTAGTCCCAGGCGAGAGTTACAGTGCAGAATATGCCGTGTTTGAAACGGGTGCCAGACATCCCTTCGCTCAGGCTGTCGGCAGGAATATCGCGAACCCTACTGCTATGCTTCTCAGTGCATCCAACATGCTGAGACACCTCAAtcttGAGTATCACTCAAACATGGTTTCTGAGGCCGTCAAGAAAGTCATCAAGCAGGGCAAGgTGAGGACGCGAGACCTAGGGGGTTACAGCACCACTGGGGACTTTGTCCGGGCGGTTGTGGACAACTTGCGCCATCGGACTGTTTGAAGATGCTTGCCATTTCTCTATCCTGGATCACACTTTAAATGCAACTTCTGATCTaaatatgttcaaatgtttCTAAAGCAGCCCTGTCATATtcccatttcatttttttctgtctggttactgatttgtttttttttgtttttttttttctctcttttaatgcatccatgtatgttttttgttttgttttccctcctgtATTCCACCTATATTCACCCCAACCCTTTGAAAggaatttatttttgacatttctgtGCTTCTTTGTTCACTCCAGTTCCGTTTATATGTAGGTTTCAGTTGGATAGATAACTTTAGTTTCTTATTCCTTCTTTTCTAGAACTTCTGTTTGGGGCTGGTCCTCGTCAAATTGCCTTTTTGATTCCAGGACCCTGATTATCAGCAAGTTTGCAAAAGCCGTTTGACCTTTTGAGACCGAAGTGCCGGCTGTGTTTTTCCGTTTGTTAATGTTACTATTGTAAACATCACTAATCAAATCTGCTGCTGTCATAACTGCCATAACATAATGGGCAATTATTAGTTTCATTTCATGATGCAAATGTTTTAAGCAGGAAGTCTGCTCCGTGCCATTGCTGACTAACTCTGGAAATGATGACTGACTGATATCAAAGGCAAATGATATCTCTCTGCCTCTCAGGCATTTTTAAACTTACCTCAGTCAATGCAGTACTGATAGTGGTGttcatattttcacttttacttCTTACCGTGTCTGGGAAGGTGGAAAccacacattttaatatacacaaaTTTCTCAAGGTTTATTCATGCTTCAAATGAAATGATCACGTTTTgtcaaatgtgaatttttattcttttcaatgcaataaaataaatatctattgaGAAGTC
>XM_043220866.1
ATTAACCCTTGGAAGTTTACCGAGGACCCCTAGTGTTGGTCGAGAAGCACTACGAGTAAAGCTTGCATCCAGCAGGGGTCAGTAGAAGAAACGCACAGCTCAATGTTCCTAGTTCAGGAGGAAGATCACGGCGACCTTTTTCTTCCTCCCGTTTAATGCATGATGGCGGCCGCGTTGAGAGGAGGACTTGTAACATTGGCCAAGGGACTGAGTGGTGCCCGGCTGCAGCCGCTGTGTGCCCGCTCTCTGAGTTTGACCTCCAGTCAGAATGTTTCAGAGAGTCCCCCAGCGAGGGCTGACAGCACCTTTAAGGTCACGATGGTCCCTGGAGATGGAGTCGGGCCTGAGCTGATGACTGCTGTCAAAGAGGTTTTCAAGGCAGCTGATATTCCTGTGGAGTTTGAGGAGTTTCACTTGAGCGAGGTGCAGAACATGGCCAGCGAGGAGAAACTGGAAGAGGTGTTGTCCTCCATGAAGAACAACCGAGTCGCCATCAAGGGAAAGATTCACACTCCTATGGAGTACAAGGGTGAACTGGCTTCATATGAGATGAGACTGAGGAGAAAGCTGGACCTGTTTGCCAATGTGGTTCATGTGAACAGCCTGCCTGGATACAGCACCCGCCACAATAACCTGGATCTGGTCATCATACGAGAGCAGACGGAGGGAGAATACAGCTCTCTGGAGCATGAGAGTGTTTCGGGAGTGGTTGAGTGCCTGAAGATCATCACCAGGGAGAAATCTCGCCGTATCGCTAAATTTGCATTCGACTATGCCACCAAGAAAGGCCGCAGCAAAGTGACCGCTGTCCACAAAGCAAACATCATGAAACTCGGGGATGGTCTCTTCCTGCAGAGCTGTGCAGAAGTGGCTGAACTTTACCCCAAGATTAAATACGAAAACCTCATCATTGATAACTGTTGCATGCAGCTGGTGCAGAATCCTTATCAGTTTGATGTGTTAGTGATGCCAAATCTCTACGGCAACATCATCGATAACCTGGCAGCGGGGTTGGTGGGCGGAGCCGGCGTAGTCCCAGGCGAGAGTTACAGTGCAGAATATGCCGTGTTTGAAACGGGTGCCAGACATCCCTTCGCTCAGGCTGTCGGCAGGAATATCGCGAACCCTACTGCTATGCTTCTCAGTGCATCCAACATGCTGAGACACCTCAAtcttGAGTATCACTCAAACATGGTTTCTGAGGCCGTCAAGAAAGTCATCAAGCAGGGCAAGGTTCGCACCTCAGACCTGGGAGGCTACGCGACGTGTGATGAGTTCACCAGGGCTGTCATCTCTAATCTGGCCGTCTAAACCCAGCACTCTACAAATAACATCTTAAGCACAATCTGCAGCACTGGTGGTCCTGTTCAAATCTGTTGGTCCAGCATTTCACATTTCCTTGCCTCAAGCCTCGTTGgtggctttatttttaaactccCATATTCTACATAGAGCACAGCTGTTGTTAGATTCATATATTGTCTCTATTCAGAACCACTGATGTAACGGACTCTATTGCTTTATGATGCTgcctaaaaatgtatatttattcggcttaattattacttatttatttaattgcaattgtTACTTAAGCAGCCTGTTCAAACATTACCAATAATAAAACGTTATGAAATATTCTGCCaa

Function

symbol description
idh3b Predicted to enable NAD binding activity; isocitrate dehydrogenase (NAD+) activity; and magnesium ion binding activity. Predicted to be involved in isocitrate metabolic process and tricarboxylic acid cycle. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; optic tectum; and pronephric duct. Human ortholog(s) of this gene implicated in retinitis pigmentosa 46. Orthologous to human IDH3B (isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta).

NR:

description
isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0051287 NAD binding molecular_function
GO:0004449 isocitrate dehydrogenase (NAD+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00030 IDH3; isocitrate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220865.1 True 2190 mRNA 0.45 11 2793688 2799867
XM_043220866.1 False 1647 mRNA 0.48 11 2793688 2800500

Neighbor

gene id symbol gene type direction distance location
p2rx4a p2rx4,p2rx4a,LOC107737869 coding upstream 143 2789507 ~ 2793545 (+)
gstt1b LOC107548781,LOC107661340,LOC107595683,LOC107737872 coding upstream 4595 2786644 ~ 2789093 (+)
ddt ddt,LOC107736937,LOC107662822,LOC107737884,LOC107692330 coding upstream 7553 2784473 ~ 2786135 (+)
chchd10 chchd10,LOC107736936,LOC107692329,LOC107737885,LOC107662830 coding upstream 9663 2782348 ~ 2784025 (+)
smarcb1b smarcb1b,smarcb1,LOC107661349,LOC107736887 coding upstream 40835 2744887 ~ 2752853 (+)
ptpra ptpra,LOC107736890,LOC107737868 coding downstream 1646 2802146 ~ 2826909 (+)
gcnt4b.2 LOC107737880,LOC107595710,LOC107662521,LOC107733381,LOC107692321,LOC107736920,LOC107548763,LOC107692322 coding downstream 31251 2831751 ~ 2837249 (+)
LOC122326157 LOC107736921,LOC107595711,LOC107548780,LOC107737879,LOC107692322,LOC107733381,LOC107548763,LOC107595710 coding downstream 42205 2842705 ~ 2845216 (+)
fam169ab fam169ab,LOC107692296,LOC107548785,LOC107736892,LOC107737867,LOC107661277 coding downstream 45280 2845780 ~ 2861350 (+)
trnaa-ugc_120 NA coding downstream 146352 2946852 ~ 2946923 (+)
G143385 NA non-coding upstream 250381 2487403 ~ 2543307 (+)
G143349 NA non-coding upstream 303488 2426489 ~ 2490200 (+)
G143356 NA non-coding upstream 389598 2402747 ~ 2404090 (+)
G143354 LOC107595722,LOC107662860,LOC107739708,LOC107548798 non-coding upstream 393619 2399072 ~ 2400069 (+)
G143340 NA non-coding upstream 455218 2336781 ~ 2338470 (+)
G143465 NA non-coding downstream 230 2800730 ~ 2801348 (+)
G143491 NA non-coding downstream 62272 2862772 ~ 2863017 (+)
G143509 NA non-coding downstream 129762 2930262 ~ 2937617 (+)
G143578 NA non-coding downstream 514677 3315177 ~ 3315473 (+)
LOC122326852 NA non-coding downstream 535761 3336261 ~ 3336689 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 556493 2233659 ~ 2237195 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other upstream 737009 2030104 ~ 2056679 (+)
LOC122326311 NA other upstream 1564633 1227998 ~ 1229055 (+)
glrx glrx,LOC107661879,LOC107665229 other upstream 1637546 1153104 ~ 1156142 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 1737763 1050838 ~ 1055925 (+)
gnrh2 LOC107595723 other downstream 28614 2829114 ~ 2830356 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 497490 3297990 ~ 3320013 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 900929 3701429 ~ 3704397 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other downstream 1306301 4106801 ~ 4213772 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other downstream 1331936 4132436 ~ 4386212 (+)

Expression


Co-expression Network