chchd10 (chchd10,LOC107736936,LOC107692329,LOC107737885,LOC107662830)


Basic Information

Item Value
gene id chchd10
gene name chchd10,LOC107736936,LOC107692329,LOC107737885,LOC107662830
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2782348 ~ 2784025 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220869.1
CCCCGAGTGTATTACCACACAAGGTCAAACGCACGTGCGTCTGCCGGCTGTCATTCAGCAGTCTCTGCGTGGATAGAGTGGATTTAACTACCTTCGCGCTTGCTTGCGGCTTCATAATAATAACTGGGGATTGATTGCAGTTACGATAAACTTTTGGAATGGCAAGAGGAAGTCGCAGTCGTCCTTCATCGGCACCAGCGAGTGCTCCTGCCCCATCCTACGCTCCAGCCCCAGCATCACCTCCACCGGTGGCAATGGCCCCTGCCACGGCCCAGCCCAAGCAGCCAGGTCTCATGGCCCAGATGGCCACCACGGCTGCTGGAGTGGCAGTCGGCTCAGCCGTAGGGCACGTGGTGGGCGGTGCCATCACAGGTGCTTTCAGCGGAGGCAGCAGCAGCTCAGAGGCACCCAAACCAGCACCCACATATCAGGAGCCCTCGCGACTTCCACCCTCTCAGTCTGGCCCGTGTCTCTTCGAGGTGAGGCAGTTTCTGGACTGTGCCACGAATCAGGCTGATCTGAGCTTGTGTGAAGGCTTCAATGAAGCTCTTAAGCAGTGCAAACTCTCACATGGTGTATCGTCTCTCGTGTGATGGAGAACATGGAAGATATAAACACTAAATGTAGTCAAATATTGGTCCTGAATATCAATATTTCCAGTAGTCAATGTGAATTATGTAtgtttatagttttgaaatACACATTCGTACTTCTGAATGTCTGATCATGTTAATGAGATTGTACaattaaatactattacaatA

Function

symbol description
chchd10 Acts upstream of or within axonogenesis and skeletal myofibril assembly. Predicted to be active in mitochondrion and nucleus. Is expressed in several structures, including adaxial cell; digestive system; musculature system; nervous system; and trunk. Used to study motor neuron disease. Human ortholog(s) of this gene implicated in frontotemporal dementia and/or amyotrophic lateral sclerosis-2. Orthologous to human CHCHD10 (coiled-coil-helix-coiled-coil-helix domain containing 10).

NR:

description
coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial

GO: NA

KEGG:

id description
K22759 CHCHD10; coiled-coil-helix-coiled-coil-helix domain-containing protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220869.1 True 764 mRNA 0.51 4 2782348 2784025

Neighbor

gene id symbol gene type direction distance location
smarcb1b smarcb1b,smarcb1,LOC107661349,LOC107736887 coding upstream 29495 2744887 ~ 2752853 (+)
LOC122326563 LOC107579035,LOC107736917 coding upstream 125588 2631096 ~ 2656760 (+)
LOC122326565 LOC107579035 coding upstream 154995 2618235 ~ 2627353 (+)
LOC122326937 NA coding upstream 495060 2280581 ~ 2287288 (+)
slc31a2 LOC107661547 coding upstream 783301 1995787 ~ 1999047 (+)
ddt ddt,LOC107736937,LOC107662822,LOC107737884,LOC107692330 coding downstream 448 2784473 ~ 2786135 (+)
gstt1b LOC107548781,LOC107661340,LOC107595683,LOC107737872 coding downstream 2619 2786644 ~ 2789093 (+)
p2rx4a p2rx4,p2rx4a,LOC107737869 coding downstream 5482 2789507 ~ 2793545 (+)
idh3b idh3b,LOC107737870,LOC107736889,LOC107548787 coding downstream 9663 2793688 ~ 2800500 (+)
ptpra ptpra,LOC107736890,LOC107737868 coding downstream 18121 2802146 ~ 2826909 (+)
G143385 NA non-coding upstream 239041 2487403 ~ 2543307 (+)
G143349 NA non-coding upstream 292148 2426489 ~ 2490200 (+)
G143356 NA non-coding upstream 378258 2402747 ~ 2404090 (+)
G143354 LOC107595722,LOC107662860,LOC107739708,LOC107548798 non-coding upstream 382279 2399072 ~ 2400069 (+)
G143340 NA non-coding upstream 443878 2336781 ~ 2338470 (+)
G143465 NA non-coding downstream 16705 2800730 ~ 2801348 (+)
G143491 NA non-coding downstream 78747 2862772 ~ 2863017 (+)
G143509 NA non-coding downstream 146237 2930262 ~ 2937617 (+)
G143578 NA non-coding downstream 531152 3315177 ~ 3315473 (+)
LOC122326852 NA non-coding downstream 552236 3336261 ~ 3336689 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 545153 2233659 ~ 2237195 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other upstream 725669 2030104 ~ 2056679 (+)
LOC122326311 NA other upstream 1553293 1227998 ~ 1229055 (+)
glrx glrx,LOC107661879,LOC107665229 other upstream 1626206 1153104 ~ 1156142 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 1726423 1050838 ~ 1055925 (+)
gnrh2 LOC107595723 other downstream 45089 2829114 ~ 2830356 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 513965 3297990 ~ 3320013 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 917404 3701429 ~ 3704397 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other downstream 1322776 4106801 ~ 4213772 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other downstream 1348411 4132436 ~ 4386212 (+)

Expression


Co-expression Network