ddt (ddt,LOC107736937,LOC107662822,LOC107737884,LOC107692330)


Basic Information

Item Value
gene id ddt
gene name ddt,LOC107736937,LOC107662822,LOC107737884,LOC107692330
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2784473 ~ 2786135 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220870.1
AGGCGTCTCTGTCCTTCAACCAATCAGAGGAAGCGGTGTATCACAAGGAAGCAGAGCCACAACGGGTCATTCTCACGCTAGTCACCAGCAGCAACTACTATAATGCCGTTCATAAACGTAGAAACCAATTTACCTGCAAGCAAGTTTCCAGAAGACTTGTTGAAAAGACTGTGCACTACATTGGCTGCAGCTTTGGGGAAACCGGAAGACAGGATGAATCTGGTGGTGAAGGCTGACCTGCCGATGATGATCGCGGGGTCCAGCTCCCCGTGTTTGTTGATGTCCTTGTCTGCCATAGGAGTGACTGATACCGCGGAGAAAAATAAGGAACATAGCGCCAAAATCTTCCAGTTTCTAACAGGAGAGCTTGGTCTTAGCGATGATcgTATTTTGATATTGTTCTACCCTCTGGAACCATGGCAGATTGGAAAGAAAGGAACAGTGATGAGCTTCTTATAAggcttctttttttgtgtgtgattccTGTTTGGGATTCAACTAGCTGGACATGCGTTGCTCCTGGGCGATAGGACCGGTTGTTCTTAAGAATACGAATATTTCCTGATCTTCTTGAACAGTAgactgtgatttaaaaaataatcactttactaagataaatataaaatgcattcagcGTTTTGATGGGAAATCAATATATCGAATGTCTATTTTTAGACAATAAGGAAAATTAAAGTTATATTGTATAACTAATTGTATGAACTGCTCGTTGTTAGTCAACTTTCCTGAGAAGGTGCCATATTCAACACATCTACGGGTCAAATCAGACCATAGTATCCAGCTTACAAAAACCATAGAAATATCCATAATCGTGTAGTCGGCTCAAAGAGTGAGTTTTGATTTGTCGCATTACTATTTTGATTTGCATAGCACAGAGTAAAAGTGcacacaaaatgtctttttctcaCCGAATTTATCATCAGCTGTGTTTGTCTAGTACGTGGATTTagaaatttgataaaaaattaaaccgaaaataaacaaacattcttGAATAAA

Function

symbol description
ddt Acts upstream of or within inner ear development and negative regulation of apoptotic process. Is expressed in brain; otic vesicle; pectoral fin bud; sensory system; and solid lens vesicle. Orthologous to human DDT (D-dopachrome tautomerase) and DDTL (D-dopachrome tautomerase like).

NR:

description
PREDICTED: D-dopachrome decarboxylase-A-like

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0048839 inner ear development biological_process

KEGG:

id description
K10028 DDT; D-dopachrome decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220870.1 True 1017 mRNA 0.40 3 2784473 2786135

Neighbor

gene id symbol gene type direction distance location
chchd10 chchd10,LOC107736936,LOC107692329,LOC107737885,LOC107662830 coding upstream 448 2782348 ~ 2784025 (+)
smarcb1b smarcb1b,smarcb1,LOC107661349,LOC107736887 coding upstream 31620 2744887 ~ 2752853 (+)
LOC122326563 LOC107579035,LOC107736917 coding upstream 127713 2631096 ~ 2656760 (+)
LOC122326565 LOC107579035 coding upstream 157120 2618235 ~ 2627353 (+)
LOC122326937 NA coding upstream 497185 2280581 ~ 2287288 (+)
gstt1b LOC107548781,LOC107661340,LOC107595683,LOC107737872 coding downstream 509 2786644 ~ 2789093 (+)
p2rx4a p2rx4,p2rx4a,LOC107737869 coding downstream 3372 2789507 ~ 2793545 (+)
idh3b idh3b,LOC107737870,LOC107736889,LOC107548787 coding downstream 7553 2793688 ~ 2800500 (+)
ptpra ptpra,LOC107736890,LOC107737868 coding downstream 16011 2802146 ~ 2826909 (+)
gcnt4b.2 LOC107737880,LOC107595710,LOC107662521,LOC107733381,LOC107692321,LOC107736920,LOC107548763,LOC107692322 coding downstream 45616 2831751 ~ 2837249 (+)
G143385 NA non-coding upstream 241166 2487403 ~ 2543307 (+)
G143349 NA non-coding upstream 294273 2426489 ~ 2490200 (+)
G143356 NA non-coding upstream 380383 2402747 ~ 2404090 (+)
G143354 LOC107595722,LOC107662860,LOC107739708,LOC107548798 non-coding upstream 384404 2399072 ~ 2400069 (+)
G143340 NA non-coding upstream 446003 2336781 ~ 2338470 (+)
G143465 NA non-coding downstream 14595 2800730 ~ 2801348 (+)
G143491 NA non-coding downstream 76637 2862772 ~ 2863017 (+)
G143509 NA non-coding downstream 144127 2930262 ~ 2937617 (+)
G143578 NA non-coding downstream 529042 3315177 ~ 3315473 (+)
LOC122326852 NA non-coding downstream 550126 3336261 ~ 3336689 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 547278 2233659 ~ 2237195 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other upstream 727794 2030104 ~ 2056679 (+)
LOC122326311 NA other upstream 1555418 1227998 ~ 1229055 (+)
glrx glrx,LOC107661879,LOC107665229 other upstream 1628331 1153104 ~ 1156142 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 1728548 1050838 ~ 1055925 (+)
gnrh2 LOC107595723 other downstream 42979 2829114 ~ 2830356 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 511855 3297990 ~ 3320013 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 915294 3701429 ~ 3704397 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other downstream 1320666 4106801 ~ 4213772 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other downstream 1346301 4132436 ~ 4386212 (+)

Expression


Co-expression Network