fgf10a (fgf10a,LOC107706443,LOC107589284,LOC107750480,LOC107703510,LOC107591746,LOC107681114)


Basic Information

Item Value
gene id fgf10a
gene name fgf10a,LOC107706443,LOC107589284,LOC107750480,LOC107703510,LOC107591746,LOC107681114
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4811498 ~ 4826764 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220874.1
ACTGAGAGTGGGTGAGGCAATTGGGAGAAACGGAGTGAGACAGATAGGAGAGGGGCGAGGAAAAATGCCCCTCGTCGCCTCTCATTCTGACGCACACATGCAAGCAAAACATGCACGCGCACACGCGGATCTTCAAAGCCGACTGCTTTTCATAGTCTCCCTATTAGCTAAAGAGATTACATCTGGGGCCCTGAACCAAATAAATAAGGTGAGAGGAGTGTCAGAGCTCAGTCTGCTCCACCTCAGGATCCTCTCAGCACTTCAGTGGTGAGCAGAAAGGAAACCCACTCTTAATCAGAGGGACACTGAGAGAGCTGGTCACAGCAGggattacagtttttttttcctactgtgGATTCCTCTCGTTTCATCGAGAACAGATTCGCTGGCCTGTTGCATTCGGGTCATTTTGCTGTTATTCTCCAGAACATTTTCCTTTCCTCTTGCTGTCCTCGTTTTCCCCCTCGTCCAACAGAGCAGGGGTTCTTGGCTGGATTGTACGTGGGAGAGAGCAGGAGGAGGTGAAGCGGTTCCCCGCGGAGGTGTTTTGAGTTATGGATGTTGACACATTCCTTCTGGACACGAGGAGAACCGGATCCAGCCTGAGCAGCATAAGCAGACGCTACCGCTTCACTGGGCTTCACCTCCTGGTATCACCCTTTCTCCCGGCCAGCTCTTCAGCATGTACCTTTCTGTGAGGCTCTTCCTAGTCTTCCGAGCTCCAGGACAATGTGCAAATGGAAAGTGACTAAGGGTGCCTCAGCCTGGTTCCGTCTGTCCTGCCTTTCCCTGCCACTGCTGCTCCTGCTCCTGTGTTCGGCTCTGCCTGTGGCCTGCCATGACACCCACAGGGCCGTACGTGCCCCGAGGGGCGCCAACTCCTCGTCGTCTGCCGTGGTGGGGCGGCATGTGCGCAGCTACAACCACCTCACGGGGGACGTGCGCAAGAGGAAACTCTTCTCCTACCAGAAGTTCTTTCTCAGGATCGATAAGAACGGAAAAGTCAACGGCACCAAAAGCAAGGACGATCCGTACAgTACACTCGAAATCAAGTCTGTGGATGTGGGCATCGTTGCCATCAAGGGGATTCAAAGCAATTACTACCTTGCAATTAACAAGAAAGGGGTGGTCTACGGGGCGAAGGATTTTGGTGTCGACTGCAAGCTGATAGAGCGGATAGAGGAGAACAGGTACAACACCTACGCCTCGGCCGAGTGGAGGAACAGGAAGAAGCCCATGTTCGTGGGCCTGATGGCCAACGGGAAGCCGATGAGAGCCAAAAAGACCCGGAGAAAAAACACAGCCACACACTTTCTTCCCATTCCTATCGTGTAGCTACAACCCCACCAAAAGGGAACATTTAACTGCACTGAGGAAAGACTTGGAATTTGTGGACAGTTTGGAGAAGGCACTATGTAAAGAAACTAAGAGAACTCCTTTTCACTGAGTCCGATTGTTgtcacatatttgtttttaagttattGGCACCAGGGAAAAtatgggacttttttttttttatcatgccaAACCTTTTTCTAGCAAAGGAAAGGTTGGACCAAAACCTACGGAGAGGAATCGGACGTTGCAACCTCCCAGAATGAACTGAAGAGACCTTTCACAGAGTGTATtgcttgtgtgtatttgtgtgtgtgaccttTGGATGCAGTTATTTATGCTGTACTAACTCATACGAAACACTCTAACAGACTCTCAAACTCTGTGACTCAGTGGACCGAAAGTTATGCAAACACTTACTGGAAGCACTTGCTCAAGGTGCAAGACTGAGAGGCCGAGACGGAGACCCCGCATCCTTCATCCGAATTTAGTCAAGCTAGCACCATAGCGTAAAGAACTCTAACATTATTAACATGCAAAAGCCACTGTATTTGATATCTCCATTCTTTACCTGACTGCTTtggaataaattatttattttatgtaatatttaaagaaaaacaaaggcaaaaaaacatggaatggacattttttatcatttatgctCCTCTTTTAAAAAGCTATTCTATCGGtttcacatgaataaataaatatatttctcctTA
>XM_043220875.1
AGACACTGAGAGTGGGTGAGGCAATTGGGAGAAACGGAGTGAGACAGATAGGAGAGGGGCGAGGAAAAATGCCCCTCGTCGCCTCTCATTCTGACGCACACATGCAAGCAAAACATGCACGCGCACACGCGGATCTTCAAAGCCGACTGCTTTTCATAGTCTCCCTATTAGCTAAAGAGATTACATCTGGGGCCCTGAACCAAATAAATAAGGTGAGAGGAGTGTCAGAGCTCAGTCTGCTCCACCTCAGGATCCTCTCAGCACTTCAGTGGTGAGCAGAAAGGAAACCCACTCTTAATCAGAGGGACACTGAGAGAGCTGGTCACAGCAGggattacagtttttttttcctactgtgGATTCCTCTCGTTTCATCGAGAACAGATTCGCTGGCCTGTTGCATTCGGGTCATTTTGCTGTTATTCTCCAGAACATTTTCCTTTCCTCTTGCTGTCCTCGTTTTCCCCCTCGTCCAACAGAGCAGGGGTTCTTGGCTGGATTGTACGTGGGAGAGAGCAGGAGGAGGTGAAGCGGTTCCCCGCGGAGGTGTTTTGAGTTATGGATGTTGACACATTCCTTCTGGACACGAGGAGAACCGGATCCAGCCTGAGCAGCATAAGCAGACGCTACCGCTTCACTGGGCTTCACCTCCTGGTATCACCCTTTCTCCCGGCCAGCTCTTCAGCATGTACCTTTCTGTGAGGCTCTTCCTAGTCTTCCGAGCTCCAGGACAATGTGCAAATGGAAAGTGACTAAGGGTGCCTCAGCCTGGTTCCGTCTGTCCTGCCTTTCCCTGCCACTGCTGCTCCTGCTCCTGTGTTCGGCTCTGCCTGTGGCCTGCCATGACACCCACAGGGCCGTACGTGCCCCGAGGGGCGCCAACTCCTCGTCGTCTGCCGTGGTGGGGCGGCATGTGCGCAGCTACAACCACCTCACGGGGGACGTGCGCAAGAGGAAACTCTTCTCCTACCAGAAGTTCTTTCTCAGGATCGATAAGAACGGAAAAGTCAACGGCACCAAAAGCAAGGACGATCCGTACAgTACACTCGAAATCAAGTCTGTGGATGTGGGCATCGTTGCCATCAAGGGGATTCAAAGCAATTACTACCTTGCAATTAACAAGAAAGGGGTGGTCTACGGGGCGGATTTTGGTGTCGACTGCAAGCTGATAGAGCGGATAGAGGAGAACAGGTACAACACCTACGCCTCGGCCGAGTGGAGGAACAGGAAGAAGCCCATGTTCGTGGGCCTGATGGCCAACGGGAAGCCGATGAGAGCCAAAAAGACCCGGAGAAAAAACACAGCCACACACTTTCTTCCCATTCCTATCGTGTAGCTACAACCCCACCAAAAGGGAACATTTAACTGCACTGAGGAAAGACTTGGAATTTGTGGACAGTTTGGAGAAGGCACTATGTAAAGAAACTAAGAGAACTCCTTTTCACTGAGTCCGATTGTTgtcacatatttgtttttaagttattGGCACCAGGGAAAAtatgggacttttttttttttatcatgccaAACCTTTTTCTAGCAAAGGAAAGGTTGGACCAAAACCTACGGAGAGGAATCGGACGTTGCAACCTCCCAGAATGAACTGAAGAGACCTTTCACAGAGTGTATtgcttgtgtgtatttgtgtgtgtgaccttTGGATGCAGTTATTTATGCTGTACTAACTCATACGAAACACTCTAACAGACTCTCAAACTCTGTGACTCAGTGGACCGAAAGTTATGCAAACACTTACTGGAAGCACTTGCTCAAGGTGCAAGACTGAGAGGCCGAGACGGAGACCCCGCATCCTTCATCCGAATTTAGTCAAGCTAGCACCATAGCGTAAAGAACTCTAACATTATTAACATGCAAAAGCCACTGTATTTGATATCTCCATTCTTTACCTGACTGCTTtggaataaattatttattttatgtaatatttaaagaaaaacaaaggcaaaaaaacatggaatggacattttttatcatttatgctCCTCTTTTAAAAAGCTATTCTATCGGtttcacatgaataaataaatatatttctcctTA

Function

symbol description
fgf10a Predicted to enable chemoattractant activity; growth factor activity; and type 2 fibroblast growth factor receptor binding activity. Acts upstream of or within several processes, including embryonic pectoral fin morphogenesis; posterior lateral line development; and regulation of hematopoietic stem cell differentiation. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Is expressed in several structures, including ectoderm; fin bud; gut; head; and lateral line system. Human ortholog(s) of this gene implicated in LADD syndrome and aplasia of lacrimal and salivary glands. Orthologous to human FGF10 (fibroblast growth factor 10).

NR:

description
fibroblast growth factor 10-like

GO:

id name namespace
GO:0048794 swim bladder development biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0001889 liver development biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0060022 hard palate development biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220874.1 False 2060 mRNA 0.48 3 4811502 4826764
XM_043220875.1 True 2061 mRNA 0.48 3 4811498 4826764

Neighbor

gene id symbol gene type direction distance location
rai14 rai14,LOC107681156,LOC107706485,LOC107589239,LOC107750373,LOC107703593,LOC107591710 coding upstream 18079 4761165 ~ 4793419 (+)
LOC122326163 LOC107681122,LOC107589283,LOC107706442 coding upstream 54098 4754626 ~ 4757400 (+)
amacr amacr coding upstream 82138 4720756 ~ 4729360 (+)
hpse hpse coding upstream 106722 4698726 ~ 4704776 (+)
helq helq,LOC107681193,LOC107591711 coding upstream 112916 4692192 ~ 4698582 (+)
ccdc80l2 ccdc80l2,LOC107706489,LOC107589242,LOC107681168,LOC107750362 coding downstream 67263 4894027 ~ 4898585 (+)
si:dkey-247m21.3 LOC107706496,LOC107681108,LOC107589286,LOC107591744,LOC107703507,LOC107708508 coding downstream 249792 5076556 ~ 5097197 (+)
pde6b pde6b,LOC107706500,LOC107681163,LOC107708533,LOC108436964,LOC107703582 coding downstream 292330 5119094 ~ 5128226 (+)
LOC122326134 hspb11,LOC107591699,LOC107703580,LOC107681190,LOC107706446,LOC107589249,LOC107708534 coding downstream 305441 5132205 ~ 5133306 (+)
si:dkey-30k6.5 LOC107681183,LOC107706501,LOC107708532,LOC107703579,LOC107591696 coding downstream 306981 5133745 ~ 5138828 (+)
G143827 NA non-coding upstream 59239 4751907 ~ 4752259 (+)
G143826 NA non-coding upstream 59988 4751217 ~ 4751510 (+)
G143751 NA non-coding upstream 222346 4588726 ~ 4589152 (+)
LOC122326582 NA non-coding upstream 233370 4563334 ~ 4578128 (+)
G143745 NA non-coding upstream 259030 4551421 ~ 4552468 (+)
G143887 NA non-coding downstream 64374 4891138 ~ 4893087 (+)
LOC122326855 NA non-coding downstream 208166 5034930 ~ 5067800 (+)
LOC122326250 NA non-coding downstream 243563 5070327 ~ 5075603 (+)
G143926 slc26a1,LOC107589247,LOC107706495,LOC107681097 non-coding downstream 277093 5103857 ~ 5106226 (+)
LOC122326722 NA non-coding downstream 284718 5111482 ~ 5114284 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other upstream 66232 4730603 ~ 4745266 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other upstream 102057 4705157 ~ 4709441 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 287318 4511926 ~ 4524180 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other upstream 425286 4132436 ~ 4386212 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other upstream 597726 4106801 ~ 4213772 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other downstream 72726 4899490 ~ 4911816 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other downstream 120820 4947584 ~ 5028046 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 674339 5501103 ~ 5506433 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other downstream 675269 5502033 ~ 5517936 (+)
sdhaf1 sdhaf1 other downstream 679782 5506546 ~ 5508393 (+)

Expression


Co-expression Network