b9d2 (b9d2,LOC107589303,LOC107706523,LOC107681120,LOC107573061,LOC107703500)


Basic Information

Item Value
gene id b9d2
gene name b9d2,LOC107589303,LOC107706523,LOC107681120,LOC107573061,LOC107703500
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5623883 ~ 5626040 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220902.1
CGAGGAAGTAAGTTGCTAAGGAAGTGATCCTTGACTACAGGAAGGCGCTGTAAACAAGGACCAGATCTGCTGGATTAGCGTTATCGGCTCGTTTTTACCAGCATTGCCGATCAATGAATCGATCGCGGTGATTGTGGACTCTTATGGCAGAATTGCACATAATTGGACAGATCATCGGGGCCACCGGATTCCCACAGAACAGCCTCTTCTGCAAATGGGGTGTACATGCAGGTGGAGCATGGAGACTTCTTTCTGGTCTGAAGGAAGGCCAGACTCAGGTGGACATGCCTCAGATAGGGGACATGGCATACTGGAGTCACCCCATTGATTTGCACTACACTACAAAAGGCCTACAAGGATGGCCTAAGCTTCATCTCCAGGTGTGGAGTCAGGACTCTTTTGGCCGATGCCAGCTGTATGGTTATGGTTATATCCACGTGCCATCAAGCCCAGGACAGCATCGTCTGCAGTGCGTGACATGGCGTCCGCTGGGATCGTGGCAGGATCAACTCTCTGAGATGTTTGTCGGAGGAGGACCGCAGCTGCGCTCGCCAGATCTCATCTACAGCGGCGCAGACCGATACAGACTCCACACAGTTGGCATGGGCACAGTTGAACTAGAGCTGTGCGTTATTCTGCGCCACTTTGACAGATATGGTGTGGAGAGCTGAGAACAGACTGCAGGTTGTCATACATTTCAGATCTATGATATATGGAGAGGAAAAGAAGgtcaaatattttgttatattggGCCGGAGGTAGTGTAAGGAGGTGTGTGATAGGACTGATAACGTGTATTTGTGCTTTGGATCTCaaacaatactttttgtatttgcttttgtacactttttgtatactttgtatgttttatagatTTCTATTTTGTTCTGATGCAATTAAATTTAGCAGTgttcaaaaatgaaacatttcgaACTCATACGAGAAACTCTGACGCAGCTGAGTTCAGCTCAGCACATGGTTTCAGTTTTTTCTCAACATAGACACAGCtttgtgtaacttttttttgtagcagGCTCTGTTTTATGTAGATAGCTCTTTGGCACATTTTGCTCATTTCCTGTTTCGactttcaaacaaaaaacaaaaaggcaagTAAGATTAAAGCAAATTTTTGCCATCagcaaaagtatatttaaaatacaaaaatacaactcaattatatatatgtatatgtatatgtatatgtatatataaaacaaacaaagtgtATTGACTGTTCTAAAGGGGTGAAATCTTTAAAATTGtttcagaaatgttgttttgaaagggcgttaaacagcattttaacgCA
>XM_043220903.1
TGCTAAGGAAGTGATCCTTGACTACAGGAAGGCGCTGTAAACAAGGACCAGATCTGCTGGATTAGCGTTATCGGCTCGTTTTTACCAGCATTGCCGATCAATGAATCGATCGCGGTGATTGTGGTATGCGGGTGCATTGTAATTGACTCTTATGGCAGAATTGCACATAATTGGACAGATCATCGGGGCCACCGGATTCCCACAGAACAGCCTCTTCTGCAAATGGGGTGTACATGCAGGTGGAGCATGGAGACTTCTTTCTGGTCTGAAGGAAGGCCAGACTCAGGTGGACATGCCTCAGATAGGGGACATGGCATACTGGAGTCACCCCATTGATTTGCACTACACTACAAAAGGCCTACAAGGATGGCCTAAGCTTCATCTCCAGGTGTGGAGTCAGGACTCTTTTGGCCGATGCCAGCTGTATGGTTATGGTTATATCCACGTGCCATCAAGCCCAGGACAGCATCGTCTGCAGTGCGTGACATGGCGTCCGCTGGGATCGTGGCAGGATCAACTCTCTGAGATGTTTGTCGGAGGAGGACCGCAGCTGCGCTCGCCAGATCTCATCTACAGCGGCGCAGACCGATACAGACTCCACACAGTTGGCATGGGCACAGTTGAACTAGAGCTGTGCGTTATTCTGCGCCACTTTGACAGATATGGTGTGGAGAGCTGAGAACAGACTGCAGGTTGTCATACATTTCAGATCTATGATATATGGAGAGGAAAAGAAGgtcaaatattttgttatattggGCCGGAGGTAGTGTAAGGAGGTGTGTGATAGGACTGATAACGTGTATTTGTGCTTTGGATCTCaaacaatactttttgtatttgcttttgtacactttttgtatactttgtatgttttatagatTTCTATTTTGTTCTGATGCAATTAAATTTAGCAGTgttcaaaaatgaaacatttcgaACTCATACGAGAAACTCTGACGCAGCTGAGTTCAGCTCAGCACATGGTTTCAGTTTTTTCTCAACATAGACACAGCtttgtgtaacttttttttgtagcagGCTCTGTTTTATGTAGATAGCTCTTTGGCACATTTTGCTCATTTCCTGTTTCGactttcaaacaaaaaacaaaaaggcaagTAAGATTAAAGCAAATTTTTGCCATCagcaaaagtatatttaaaatacaaaaatacaactcaattatatatatgtatatgtatatgtatatgtatatataaaacaaacaaagtgtATTGACTGTTCTAAAGGGGTGAAATCTTTAAAATTGtttcagaaatgttgttttgaaagggcgttaaacagcattttaacgCA

Function

symbol description
b9d2 Predicted to enable gamma-tubulin binding activity. Involved in cilium assembly and establishment or maintenance of cell polarity. Acts upstream of or within establishment of planar polarity and opsin transport. Located in cilium. Orthologous to human B9D2 (B9 domain containing 2).

NR:

description
PREDICTED: B9 domain-containing protein 2

GO:

id name namespace
GO:0001736 establishment of planar polarity biological_process
GO:0036372 opsin transport biological_process
GO:0036038 MKS complex cellular_component
GO:0005813 centrosome cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043015 gamma-tubulin binding molecular_function

KEGG:

id description
K16745 B9D2; B9 domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220902.1 False 1312 mRNA 0.42 4 5623883 5626040
XM_043220903.1 True 1320 mRNA 0.42 4 5623896 5626040

Neighbor

gene id symbol gene type direction distance location
rtn2b rtn2,rtn2b,LOC107706456,LOC107703556,LOC107708513 coding upstream 93680 5524580 ~ 5530203 (+)
LOC122326433 LOC107589295,LOC107681110,LOC107706452,LOC107703460,LOC107591721 coding upstream 124290 5489878 ~ 5499593 (+)
itpkca itpkca,LOC107706518,LOC107589262,LOC107681162,LOC107703557,LOC107591683,LOC107708494 coding upstream 134121 5482487 ~ 5489762 (+)
ccdc61 ccdc61,LOC107681161,LOC107706517,LOC107589261 coding upstream 142102 5475234 ~ 5481781 (+)
lifrb NA coding upstream 149474 5466514 ~ 5474409 (+)
tgfb1b LOC107681095,LOC107706521,LOC107589304,LOC107703499,LOC107754964,LOC107573058 coding downstream 968 5627008 ~ 5631309 (+)
LOC122326807 LOC107742230,LOC107703498,LOC107573064,LOC107735684 coding downstream 20402 5646442 ~ 5647335 (+)
LOC122326971 or125-7,LOC107573644,LOC107719003,LOC107703451 coding downstream 26269 5652309 ~ 5653238 (+)
or62b3 LOC107719021,LOC107703497,LOC107573649 coding downstream 35684 5661724 ~ 5662650 (+)
or62b5 or125-3,LOC107703496,LOC107719020,LOC107573648 coding downstream 39320 5665360 ~ 5666286 (+)
G144081 LOC107708509 non-coding upstream 84419 5538200 ~ 5539464 (+)
G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding upstream 248961 5366192 ~ 5374922 (+)
G144007 NA non-coding upstream 295478 5327230 ~ 5328405 (+)
G143937 NA non-coding upstream 471994 5151557 ~ 5151889 (+)
LOC122326722 NA non-coding upstream 509599 5111482 ~ 5114284 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding downstream 6001 5632041 ~ 5632851 (+)
G144129 NA non-coding downstream 58788 5684828 ~ 5685097 (+)
G144130 NA non-coding downstream 79500 5705540 ~ 5706835 (+)
LOC122326140 NA non-coding downstream 166824 5792864 ~ 5794604 (+)
G144157 nkx6.1,nkx6-1,LOC107703597,LOC107700773,LOC107706438,LOC107722812 non-coding downstream 303729 5929769 ~ 5930885 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other upstream 105947 5502033 ~ 5517936 (+)
G144077 NA other upstream 113137 5508665 ~ 5510746 (+)
sdhaf1 sdhaf1 other upstream 115490 5506546 ~ 5508393 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other upstream 117450 5501103 ~ 5506433 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 595837 4947584 ~ 5028046 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other downstream 106400 5732440 ~ 5735137 (+)
LOC122326918 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 other downstream 109873 5735913 ~ 5741905 (+)
LOC122326980 tnksa,LOC107706493,LOC107681059,LOC107589272,LOC107708542,LOC107703465,LOC103369208 other downstream 168722 5794762 ~ 5799702 (+)
G144152 NA other downstream 221901 5847941 ~ 5849053 (+)
G144330 NA other downstream 908060 6534100 ~ 6535794 (+)

Expression


Co-expression Network