rtn2b (rtn2,rtn2b,LOC107706456,LOC107703556,LOC107708513)


Basic Information

Item Value
gene id rtn2b
gene name rtn2,rtn2b,LOC107706456,LOC107703556,LOC107708513
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5524580 ~ 5530203 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220917.1
CAGACCAACCCCTTCCCGCTGACAACGCCAGGATGGCCAAAAAAAGCCCAGAGGGTTCGTGGAGTGCTGGGAGGAGAGGGGGTTTGGTGTGGAAGCAGCAGAAATGGCCAGCAAAGTGTTGGATCTGTTATACTGGAGAGATGTGGGGACCACCGGGCTGGTGTTTACAGGTTTGGTTGTGGGTTTGGCTTGTTTGTTCCAGCTCAGTGCCATCACGGTCCTCTCCAACCTTGGTTTAGGCATCATGGCCTTCACTCTCCCTGTGTGCTTGCTCTACAAAGCCATGACGCTGGTCCGCCTCAATGATGGATCTCATCCTTTTCAgtCATATTTGGATGAGGACGGTACGCTGACAGATGAGGACACAGTTCGCGTAGCGGAACAAATCGTTCTGCTGATTGCTACGGCTGTCACCGAGTTGAAGAGGCTGTTCTTCATCGATAGCATCATGGACTCAGCGAAGtTTGTTGTGTTCCTGTATCTGTTGACTTATGTGGGGATCCAAGCCAACGGTCTCACGCTGTTGATGAGTGGTGTGATATGTGCCTTCTCTTTGCCATTGTTGTACAGACTTCAACAGGAAAGGATCGACAAGATTGTCAAAGCAGTCAAAACACTTGTAGAAAAAGGCACCGAAATAGTTGATCTTGTGATTTCACTGGCCAAACCTCCACCAGCCCCAGCCCCAGCACCTTCCCCTGCCCCCACAGCAAAACATAAACAGAAGACTAAAtgaagaggagggagagagatggGGGTGAGGAGAAGTAATGTGGAGTACACTGAACAAACAAAGTCTTACGCTGCAGCTGTAGCCCTGTGAGTTCAGCAGGGTCGGGGGTTTGGGGGTTATGAATGAGCGTTATGTTTTACAGTACGTTTCTTACGGTGCTAGGAGATTCTTCAATAGGTCTTCTGAAAAGAATTAAACGGGCTTCTTCAGTCAAGAGAAGTCTAGGTGTACGTCTAATGTGTTCATTTAACTCAAACTGTCAAACGgctgtgtattatttataattattggTTCATTTTGCCTGACGAGGCTTTTTTTCTACTGATTTTCATAGAAAAAGTTGAACCTAGTTACAGTTGCTAGTACATTTTAGTCCACTAGAGGGTATAATGAGACCGTACAATCACAGCAGATCTGGGTCAGGACAGCATGTTGCAGAAACTCTGTCAAgtaaatttgttttgaaatgacaaTTCCCAGTGGGGCTGTGCATATAATTtgggttttattatttaatacttaatGTTTCAAATTACAGAGCAATTCAAAACTAATTTATAAGTCACTTTGTCATGTTTTGCCTGCCTGGCTTTGTACGTCTTTTGTGCAACATGACCCCCAGTAAACACttgttttcaatttta

Function

symbol description
rtn2b Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in skeletal muscle. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 12. Orthologous to human RTN2 (reticulon 2).
rtn2 Involved in negative regulation of amyloid-beta formation. Located in endoplasmic reticulum. Implicated in hereditary spastic paraplegia 12.

NR:

description
PREDICTED: reticulon-2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220917.1 True 1377 mRNA 0.45 7 5524580 5530203

Neighbor

gene id symbol gene type direction distance location
LOC122326433 LOC107589295,LOC107681110,LOC107706452,LOC107703460,LOC107591721 coding upstream 24987 5489878 ~ 5499593 (+)
itpkca itpkca,LOC107706518,LOC107589262,LOC107681162,LOC107703557,LOC107591683,LOC107708494 coding upstream 34818 5482487 ~ 5489762 (+)
ccdc61 ccdc61,LOC107681161,LOC107706517,LOC107589261 coding upstream 42799 5475234 ~ 5481781 (+)
lifrb NA coding upstream 50171 5466514 ~ 5474409 (+)
rictorb rictor,rictorb,LOC107681152,LOC107589259,LOC107703559 coding upstream 58193 5443111 ~ 5466387 (+)
b9d2 b9d2,LOC107589303,LOC107706523,LOC107681120,LOC107573061,LOC107703500 coding downstream 93680 5623883 ~ 5626040 (+)
tgfb1b LOC107681095,LOC107706521,LOC107589304,LOC107703499,LOC107754964,LOC107573058 coding downstream 96805 5627008 ~ 5631309 (+)
LOC122326807 LOC107742230,LOC107703498,LOC107573064,LOC107735684 coding downstream 116239 5646442 ~ 5647335 (+)
LOC122326971 or125-7,LOC107573644,LOC107719003,LOC107703451 coding downstream 122106 5652309 ~ 5653238 (+)
or62b3 LOC107719021,LOC107703497,LOC107573649 coding downstream 131521 5661724 ~ 5662650 (+)
G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding upstream 149658 5366192 ~ 5374922 (+)
G144007 NA non-coding upstream 196175 5327230 ~ 5328405 (+)
G143937 NA non-coding upstream 372691 5151557 ~ 5151889 (+)
LOC122326722 NA non-coding upstream 410296 5111482 ~ 5114284 (+)
G143926 slc26a1,LOC107589247,LOC107706495,LOC107681097 non-coding upstream 418354 5103857 ~ 5106226 (+)
G144081 LOC107708509 non-coding downstream 7997 5538200 ~ 5539464 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding downstream 101838 5632041 ~ 5632851 (+)
G144129 NA non-coding downstream 154625 5684828 ~ 5685097 (+)
G144130 NA non-coding downstream 175337 5705540 ~ 5706835 (+)
LOC122326140 NA non-coding downstream 262661 5792864 ~ 5794604 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other upstream 6644 5502033 ~ 5517936 (+)
G144077 NA other upstream 13834 5508665 ~ 5510746 (+)
sdhaf1 sdhaf1 other upstream 16187 5506546 ~ 5508393 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other upstream 18147 5501103 ~ 5506433 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 496534 4947584 ~ 5028046 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other downstream 202237 5732440 ~ 5735137 (+)
LOC122326918 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 other downstream 205710 5735913 ~ 5741905 (+)
LOC122326980 tnksa,LOC107706493,LOC107681059,LOC107589272,LOC107708542,LOC107703465,LOC103369208 other downstream 264559 5794762 ~ 5799702 (+)
G144152 NA other downstream 317738 5847941 ~ 5849053 (+)
G144330 NA other downstream 1003897 6534100 ~ 6535794 (+)

Expression


Co-expression Network