cd8b (LOC107754642,LOC107665224,LOC107600931,LOC107739674,LOC107662663)


Basic Information

Item Value
gene id cd8b
gene name LOC107754642,LOC107665224,LOC107600931,LOC107739674,LOC107662663
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1064842 ~ 1068363 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220927.1
CACGAAGAACAGAAaggaaaacacagacacacacagttgACAGCTCACACACAGACGCCCAAGGATGACCCTCTCTTGCATGCGCTTTTGTGTGTTCGTATGGATGGCGGCGGCTTCGCTGCCCACCTTCCAAGCAACGCCGTCTGTTATTTACGCCAAAATCAACGGCTCGGAAGCGATGTCCTGTGAATGTCCAAATCACGCCTGCCAGGAGGTTTTTTGGTACCGATACCTCGAGAGGACGAAGACTCTTCAGTTCCTCGTGTTTGTCAACAGCGCTGGCAGAGAGCAATATGGAAAAAACCTGAACGGCACTCGGTTCAAGGGGTCGTTGTCCGGAGGAAACAGGCTGGGCTATACCCTGCGTGTAACAGGACTACAGGAGGATGATATCGGCCTTTATTCCTGcatgtttaaaactaaaaatactatGCCTGTCGGATATTACATAATGCCTGGAGTGAATCCTCCGACAGCTCAACCACCAACAGTAAAGTCCAACGCAGCCAAGAAGAACTGTAATTGCAAACTTCACAGCTCTCCTAAAGGCTGTGAACAATTAGTGCTTTGGGCAGGCGTTGGTGCTCTTCTGCTTTTGGCTGTTACACTTGCTGGCACACTTTACTACTTCAGTcGTCTACCTAAAAAGTGCCGACATCGATTCACCAAGACGAATCCGTTGCGATGAGGTGGGAGAACAAACTCTTCATGTCGAAACAAATGTGGTGGTCGTTTTTCTCTCTTAAGCGTGGACCTCAGAAATCTTGCCGTGGTTtcaaagatatataaatatatcggggtttaataatgtaaaaaaatgtgtgtatataaaaataatagcttAAATTTACAGTTCAGTGTTTCCTTGGACGTTCTTCAACCAGCAGTCCACTTAATGAATTAGATTCATTGTCTGACTCGACTGAATTAAACCAGAGCAGAACATACCACCAGGATCACCACAAAACTAAACTCACTCTAAACTTGGACTAACCACAGCTGTCTTAATCAAGCTTTGAGTTTTGTTCTTGCCAGTACAGTATGCTTAATTTGTGCCTGAATGtacagttttttcatttttatctcatATGCTGTCGTTTGTGCTTTCATGTTACGCTCattaaaaggtattttaattAAGCTGA

Function

NR:

description
PREDICTED: T-cell surface glycoprotein CD8 alpha chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220927.1 True 1145 mRNA 0.44 7 1064842 1068363

Neighbor

gene id symbol gene type direction distance location
zmat1 krcc1,LOC107600930,LOC107662001,LOC107739673,LOC107584622 coding upstream 1702 1056331 ~ 1063140 (+)
grin1a grin1a,LOC107662014,LOC107754622,LOC108435476,LOC108278500,LOC107600932 coding upstream 16831 1023624 ~ 1048011 (+)
zgc:92275 zgc:92275,LOC107662064,LOC107754619,LOC107665231,LOC107739715,LOC105902521,LOC105024189,LOC106565467 coding upstream 49542 1005795 ~ 1015300 (+)
LOC122326352 cel.2,cell,LOC107662085,LOC107665230,LOC107665247,LOC107584549,LOC107754621 coding upstream 59752 999224 ~ 1005090 (+)
LOC122326353 cel.2,cell,LOC107662085,LOC107665230,LOC107584549,LOC107665247,LOC107754621 coding upstream 66765 991991 ~ 998077 (+)
cd8a NA coding downstream 5886 1074249 ~ 1077136 (+)
pcsk1 LOC107739678,LOC107661910,LOC107600928,LOC107665244 coding downstream 48228 1116591 ~ 1131625 (+)
ell2 ell2,LOC107739680,LOC107665220,LOC107600927,LOC107754629 coding downstream 70882 1139245 ~ 1152504 (+)
nudt2 nudt2,LOC107739745,LOC107661859,LOC107600925,LOC107579639,LOC107584670,LOC107754633,LOC107665228 coding downstream 112092 1180455 ~ 1184070 (+)
ubap1 ubap1,LOC107661828,LOC107739682,LOC107754631,LOC107665242 coding downstream 124036 1192399 ~ 1199773 (+)
G142866 NA non-coding upstream 147879 916621 ~ 916963 (+)
G142832 NA non-coding upstream 252785 759275 ~ 812057 (+)
G142807 NA non-coding upstream 338250 726258 ~ 726592 (+)
G142729 LOC107749016,LOC107565393,LOC107701931,LOC107719087,LOC107584674,LOC107662962 non-coding upstream 630720 431624 ~ 434122 (+)
G142672 NA non-coding upstream 861667 202787 ~ 203175 (+)
G142941 NA non-coding downstream 3905 1072268 ~ 1074041 (+)
G142933 NA non-coding downstream 13804 1082167 ~ 1083273 (+)
G142954 NA non-coding downstream 21880 1090243 ~ 1102107 (+)
G142963 NA non-coding downstream 37122 1105485 ~ 1105817 (+)
G142964 NA non-coding downstream 38383 1106746 ~ 1106952 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 8917 1050838 ~ 1055925 (+)
alpk2 LOC107600938,LOC107662700 other upstream 258736 735722 ~ 806106 (+)
glrx glrx,LOC107661879,LOC107665229 other downstream 84741 1153104 ~ 1156142 (+)
LOC122326311 NA other downstream 159635 1227998 ~ 1229055 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other downstream 961741 2030104 ~ 2056679 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 1165296 2233659 ~ 2237195 (+)
gnrh2 LOC107595723 other downstream 1760751 2829114 ~ 2830356 (+)

Expression


Co-expression Network