chek1 (LOC107548125,LOC107681196,LOC107706535,LOC107551636,LOC107719013,LOC107703487)


Basic Information

Item Value
gene id chek1
gene name LOC107548125,LOC107681196,LOC107706535,LOC107551636,LOC107719013,LOC107703487
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 6456674 ~ 6460937 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220950.1
CGGTGGTGTCACGTCTCCAGAGCGCGCCAAGTTTGGACAGACTTGCGTATATTTCTGTTTAGGCACATACAGCGAGCGTATGTAAATATACCaacagaataaatatataacctgCATCAAATGGGACAGCTTCAACACCGATATTGGTAATTCATAAGCTCAGATCATGGCTGTTCCTTTTGTTAAAGACTGGGATGTGGTACAGACCCTAGGAGAGGGAGCGTATGGAGAGGTGCGACTGTTGGTAAACAAGAAGACAGAAGAGGCGGTGGCGGTGAAAGTTGTGGACATGGCGAAAGCCAAGGATTGTATAGAGAATGTAAAGAAGGAGGTTTGCATATGCAAGATGCTTTCACACCCAAACATCGTTCGTTTCTTTGGGCACAGGAGTGAGGGGACGACACAGTACATCTTTCTGGAGTACTGTAGTGGAGGAGAGCTCTTTGACAGGATAGAGCCAGACGTCGGGATGCCAGAAAAGGAAGCGCACAGGTTTTTTCAGCAGCTAATAGCTGGTGTGGAATATCTTCACAGTGTTGGGATTACACATCGCGACATAAAACCTGAGAATATTCTTCTTGATGACAAAGATAATCTGAAGATTTCTGATTTCGGACTGGCTACCATGTTTCGGCACCGTGGCCGGGAGCGGGCATTGACCCGTCTGTGTGGCACTCTGCCCTATGTTGCCCCTGAGCTGATGTCACGCTCAGCCTTCCACGCTCAGCCTGCAGACACTTGGGCTTGTGGCATTGTGCTCACTGCAATGTTAGCTGGAGAGTTACCTTGGGACCAACCAAGTGAAAACTGTCAGGAGTATTTGGATTGGCTAGAGAAGAAAATCTACCTcacaccctggaagaaaatcgATGCTGTTCCACTGAGTCTGCTATCTAAGATATTACTGCATAATCCAGAGGACAGGTTCACTATTCCTGAAATTAAGAAACACAGATGGTTTAGTAGAAGTTTCAAATCCGCAGTAAAACGACAGAGTGACACACCAGTGACCAAAATGCAAAGAGCTGATTCTGAGCTCTCgcagctgaaaagaaaaaacagtgaTGACAGAGCGCAGATCTCCAGCTCTCAGCCTGAGCCGCAGGGATTGTGGGAGGAGAAGGAGGTCACCGTGCACAATGATGTCAGTGTCAGCTTTTCACAGCCTACCTGTCCTGACCACATGCTGCTGGGCAGCCAACTGCTTGGCACACCGGGTGCCAGCCAGAGCCCATGGCAGCGGTTGGTGAGAAGGATGACTAGGttttttaccacggtaaaggcAGAACCGTCTTGCATTGCTCTCAAGGGTGCCTGCATTGCTATGGGACACACATGGAAACAGAGCTGCACCAATCAGGCGACAGTGTCCACAATGGATCGCCGCAATAATAAGCTGATCTTCGTAGTGCACTTCCTGGAAATGGAGGAACGCATTTTAGTAGATTTTCGATTGTCAAAGGGGGACGGTTTGGAATTCAAGAGGATATTCCTCAAACTGAAACAGAAGCTGTCTGACATTATTAGTAACCAGAAGGTTTTGCCTTTGAATTGATGCGTGTCCGCATTTTTACATGCAAAGTCTGCTTTCACACATGTGTACACGGGTTGTTTTTATGATCGTGGAACATGTTCAGATTTATATGTTTgaagttgtgtttgtgtgtgtctgtgtttctgattTGTGTGTAAAGGAATGAGACGAAGCTCTCAAGTTAAGTTCATTCATGTTCCGTTACTATGAAGATAGGGTTTCATATAGATGTGAGATCCTGGATGTGAAAAACTgaattgaaaataaatctgtcattaataa

Function

NR:

description
serine/threonine-protein kinase Chk1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007095 mitotic G2 DNA damage checkpoint biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K02216 CHEK1; serine/threonine-protein kinase CHEK1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220950.1 True 1816 mRNA 0.46 13 6456674 6460937

Neighbor

gene id symbol gene type direction distance location
capslb capslb,LOC107706465,LOC107548122,LOC107682731 coding upstream 58369 6395659 ~ 6398305 (+)
lmbrd2b lmbrd2b,LOC107681180,LOC107548170,LOC107551632,LOC107703539 coding upstream 61060 6386242 ~ 6395614 (+)
nadk2 nadk2,LOC107681150,LOC107548165,LOC107703540,LOC107551628 coding upstream 86133 6363254 ~ 6370541 (+)
myo7ab myo7a,myo7ab,LOC107706532,LOC107681153,LOC107718980 coding upstream 102909 6329293 ~ 6353765 (+)
capn5b capn5b,LOC107706463,LOC107548164,LOC108440168,LOC107718981,LOC107703490,LOC107551626 coding upstream 136447 6286144 ~ 6320227 (+)
LOC122326080 LOC107719011,LOC107548127,LOC107681113,LOC107706467,LOC107551638 coding downstream 46329 6507266 ~ 6509639 (+)
LOC122326078 LOC107718966,LOC107551640,LOC107703534,LOC566907 coding downstream 52579 6513516 ~ 6515879 (+)
bud13 si:dkeyp-69c1.6,LOC107703532,LOC107718963 coding downstream 64012 6524949 ~ 6528555 (+)
arhgap42a arhgap42,LOC107703530,LOC107551641,LOC107718960 coding downstream 85134 6546071 ~ 6568023 (+)
birc2 birc2,LOC107703529,LOC107731450,LOC107718959,LOC107551643,LOC107548174,LOC107681145 coding downstream 124776 6585713 ~ 6593962 (+)
G144212 NA non-coding upstream 393994 6062424 ~ 6062680 (+)
G144157 nkx6.1,nkx6-1,LOC107703597,LOC107700773,LOC107706438,LOC107722812 non-coding upstream 525789 5929769 ~ 5930885 (+)
LOC122326140 NA non-coding upstream 662070 5792864 ~ 5794604 (+)
G144130 NA non-coding upstream 749839 5705540 ~ 5706835 (+)
G144129 NA non-coding upstream 771577 5684828 ~ 5685097 (+)
G144308 LOC107706534,LOC107548126,LOC107681195,LOC107703486,LOC107719012,LOC107551634 non-coding downstream 1713 6462650 ~ 6462933 (+)
G144317 LOC107703481,LOC107551613 non-coding downstream 36764 6497701 ~ 6537141 (+)
G144329 NA non-coding downstream 71103 6532040 ~ 6533579 (+)
G144347 LOC107731449,LOC107681146 non-coding downstream 144544 6605481 ~ 6606030 (+)
G144348 NA non-coding downstream 145910 6606847 ~ 6607346 (+)
G144152 NA other upstream 607621 5847941 ~ 5849053 (+)
LOC122326980 tnksa,LOC107706493,LOC107681059,LOC107589272,LOC107708542,LOC107703465,LOC103369208 other upstream 656972 5794762 ~ 5799702 (+)
LOC122326918 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 other upstream 714769 5735913 ~ 5741905 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other upstream 721537 5732440 ~ 5735137 (+)
G144077 NA other upstream 945928 5508665 ~ 5510746 (+)
G144330 NA other downstream 73163 6534100 ~ 6535794 (+)
cfap300 si:rp71-1p14.7,cunh11orf70,LOC107731447,LOC107548131,LOC107681129 other downstream 121809 6582746 ~ 6585034 (+)
anapc13 anapc13,anc13,LOC107756075,LOC107693524,LOC107561055 other downstream 1446527 7907464 ~ 7909027 (+)
LOC122326775 si:dkey-183i3.9,LOC107715278,LOC107669329 other downstream 1746866 8207803 ~ 8211125 (+)
si:dkey-183i3.6 NA other downstream 1756038 8216975 ~ 8221572 (+)

Expression


Co-expression Network