pde6b (pde6b,LOC107706500,LOC107681163,LOC107708533,LOC108436964,LOC107703582)


Basic Information

Item Value
gene id pde6b
gene name pde6b,LOC107706500,LOC107681163,LOC107708533,LOC108436964,LOC107703582
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5119094 ~ 5128226 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220957.1
CACTTTTTTGCTAATGGCTTTTAAGGTTATCCATGCTATACAAAATGGCAGCGTTATGGCAGTATTATTCttttaacagaattaaaataaaatacagatgtaattacactTTTTCGAGAATAGTTATGGATGCtgataatattttcttttatggcaGTTCAGGCACACTATTAATATGTCAGGTCATCCTTTGGTCTTATTTAATGACTGATTTTCACATGTACTCTACAATTGTTCTTTTTCCGATTTTTTTTAGGAAAGCACTTTCACTTGCTCTCATGGTTGCAGTCACATTGAGTAAGAAGACAACTGGGGTGCTGAGATAATCAGCTAGTGGCCTGGTTAAATAGGGCTTAGTAATGAggagtgtgtttttaataagaaCTTAAAGAGCTTGTAGCGCAAAGGCCAGGCTTCAGGGAGAGGAGACATAGAGGAACAAAGCATATGATTGTGCATTAGCACTCACACACTTTATGATCGTATAGCTTTTCTTGTAAAACGGTCATTAGGAGCATCTCTTCTCTTTCCCTGGACACAGAGAGACTTCAGAGGAGGACGTGGTTCTCTTTCAGctctgggctcaggctttgatGCAGATCACCTGATCAGTTTTACTAGAGCAGATCCTGATTCACCTTCAACACTATTAGGAAAACACCTTGCTGATGACAGTTAGATTGGACACGGGTTGCCCCTGCTGTGGCAGGCGTCTCATCTCACGGTTCTTCTCGGTTTCTCGACCATTTGAGGATTATATGCTGTAAATATTCCATTTTTGTCTTGAAACCTCATTTGAAATCTCATTCCTTGGCCGTCACCTGCCAGTGCTGAGACTGAGGCAGAAGATCCCAAGATGAGTGTCAAAAAGGAAGACGTGGAGAAGTTTCTGGATGGAAATCCAGATTTTGCCAGGAGCTATTTTGACAAAAAGCTCAAACCTGGGGCCGTGGCCTCCATCATGCGAATACCAGAGTCTAAAGTGGATATGGACAGTTTTAAGGACATATGCTCGATAGAGGAGGGAGCGATATTCTACGATCTCATTACAGACATGCAGGAGAACGTCAATATGGAGAAGGTGATTTTTAAGATTCTGAAGCGAATCAGTGCTCTGATCCACGCCGACAGATGTAGCCTGTTCATGTATCGACAGAGGAACGGCATCGCTGAGCTGGCTACACGTCTCTTCAACGTGAATGAAAACTCTGAGCTGGACGATTGCGTTGTGCCTCCAGACTCGGAGATCGTCTTTCCTCTGGACATCGGTATAGTAGGATACGTGGCTCAAACCAAGAAGCCAATCAATGTGAAGGATGTTACACAGGACAGTCACTTCAGCTCATTCGTTGATGAACTTACTGAATACACCACAAACAATATGTTGGCGGCACCCATCATGAATGGAAAGGACGTCGTAGCCGTCATCATGGCAGTCAACAAGACTACTGGACCCCATTTCAcagatgaagatgaggatctttttttaaagtatctAAAGGTTGGCTCTCTGAACCTGAAGATTTTTCATCTGAGCTACCTTCATAACTGCGAAACACGAAAAGGACAGCTGCTGTTGTGGTCAGCTAACAAGGTGTTTGAAGAGCTCACAGACATTGAACGACAGTTTCACAAAGCTTTGTACACAGTACGAGCCTATCTCAACTGTGACAGGTACTCTGTGGGCCTACTGGACATGACCAAGGAAAAGGAGTTCTTTGATATTTGGCCTGTGTTGATGGGAGAGCAGGCACCCTATTCTGGCCCAGTCACTCCAGATGGAAGAGAAATCATTTTCTACAAGGTTATCGATTATATTTTGCACGGAAAAGAAGACATCAAGGTCATACcAAATCCACCGGCAGATCATTGGGCTTTGGCTAGTGGATTACCTACATATGTAGCGGAGAGCGGATTTATCTGCAACATCATGAATGCAGCAGCAGATGAAACGTTCGAATTTCagACGGAACCGTTGGATAGCAGTGGATGGACCATCAAGAATGTGCTGTCCCTCCCAATTgtcaacaaaaaagaagaaattgtgGGCGTTGCAACTTTCTACAACAGGAAGGATGGCAAACCATTTGATGACCATGACGAACAACTCATGGAGGCTTTGACACAGTTTCTGGGCTGGTCGGCCCTCAACACAGACACCTATGACAAAATGAACAAGCTGGAGAACAGGAAAGACATTGCCCAGGACATGGTGCTGTACCATGTCAAGTGTCGAGATGATGAGATTCAAAACATCCTTaaAACAAGAGAATATTTTGACAGAGAACCAAGAGACTGTGAGGAGGAAGAGCTTTTGGAGATACTGAAAAAAGAGCTGCCTGGCCCGAAGAAGTTTGAAATCTACGAATTCCGTTTCTCAGACTTTGACTGCACTGAACTGGATCTTGTAACATGCGGGATCCAGATGTACTATGAAGTCGGAGTGGTTAAAAAGTTCCAGGTCCCTCAGGAGGTTTTGGTGAGATTCATGTACTCAGTCAGCAAAGGCTACAGAAGAATCACCTACCACAACTGGCGCCATGGCTTCAATGTTGGGCAAACCATGTTCACTTTACTCACGACAGGAAAACTGAAGCGGTATTACACAGATTTGGAGGTGATGGCCATGATCACTGCCGGCTTCTTGCATGATATTGACCACAGAGGAACAAATAATCTCTACCAAGTGAAGTCCCAAAATCCTCTAGCAAAGCTGCATGGATCATCCATTCTAGAGAGGCATCACTTGGAATTTGGCAAATTCTTGTTAGGCGACGAGtcatTAAACATCTTCCAAAACCTCAACAGAAGACAAACGGAGCATGTCTTCCACCTCATTGACATTGCCATTATTGCAACTGATCTTGCCTTGTACTTCAAAAAGAGAACGATGTTTCAGAAAATTGTGGATCTCTCGGAGACATACGAAGAACAGAAAAAATGGGTGGACTTCATGTCTCTTGAAACGACAAGGAAAGAAATTGTAATGGCCATGATGATGACCGCATGTGACCTCTCAGCTATCACAAAACCATGGGAGGTGCAGAGCAAGGTTGCCCTCTCTGTAGCAGCTGAGTTCTGGGAGCAGGGTGATCTTGAGAGGACTGTTCTCGAGCAACAACCTATCCCCATGATGGACAGGAACAAAGCCGCAGAGCTGCCAAAGCTTCAGTGCGGTTTTATCGACTTTGTCTGTACTTTTGTCTACAAGGAATTCTCTCGTTTTCACCCGGAGATCCAGCCAATGTATGATGGCATTCTGAACAACCGGAAGCATTGGAAAGAGAGGCAGGAAGAATATGAGGCAAAACTAAAGGCAATGGAGGAGGCGGTCAAGGCCAGACAGGAAGCAGCTACCAAAAATGCTGCAAACTCCAACAGCACCAGTGGATCGGGATCAGGATCCAAGACCTGCTCCATCTGCTAGAGAAAACACAACAAGGGCAAGGCAGCTTGGGATGTAACCTAGCCTCTAAGTAGTACATCACATCAAGATCACACTTAGGATCCTCAAGAATCTGATCAGGAGTGAGTGGGAAAACGCTATCAAACACACGTATCGGATCTTGTCTACAGTTAGCATTACCGTTTCCTTCGGGTCATAGTGTTTAAGCATTTTCATTGAATGGTAATCGGTTTCAATTAAGCACAATGTACTACAAGaaaatgtaggttttttttatccatGATGTTTTTTCCAAGGATTTTAGTATCACCTAGGGTTTAATTTAGCTACTCAGTGGTGATCAGCCGCTGTTTAAAATCAAGCAGGTTCATGACAAGTTTAATCGAGGAATCCAAAAAATACGTACGATACATTGTCGTAATAGCAAAATAACCTTTTCTGTTTTGTAACTGCAATAATGTTGTCACCTCTCACTGCATATCAAAAAAACAAAGGCCATTATATGTGATGTAATTTTTTCCctctaaaaataatactaaatgtaCAGCCGAAAGCTAGCTTTCAGGTCGCTAAATGTGACAAGGTAAGTGCGCAGTAAGATATAGCTTCTAGTAAGCCAGACGGCAGAGTACAGTGGTTGTCAGAAGGTATAAAGTTAGggttgtttttatagtttgagTTTCCTTCACTTAAGCCGACAGGTAATACGCAATTGTCCTTCAGGCTTATTTACATCAAGTGCTGTCATGGGTGTGTTTTACCGAGCAATGTCCCGTTACTCAGTGTCTCTGCTGCTGGGACATGCGTTCAAAGAGAAAACTGATTCCAGTGGCCTTGATACCATTCATCTGTTCTCAGCTGACCCGTCATCACACTGAACTTCAGGAAGTTTCAAGTTATTGAACTCATTTAAGTCCTTCAATTCACGAACGTATTCCACTTCAGGCAATTCCGTTCTTCCTACTTCTGACTTCTTTGTAGGAAGTCTCTCTTTCACTGGTTGTCTGTAAACCATCAGTTGTGAATCGAATTGTGTAAATATACgaaattatttgtaaatctTACGAGGTACGATTTTACATAGCGTTAAAGTAAATACCACTAAGGTGTGTTTTAGCGCACTTAATTTTACGAGCTTGTTACACAAAGCTGCTGCTTCTGTTTCAGATTATCATAAAGGTTTAATTTAAGTAGCGAAGGTTCGGGCGGTAGCAACTAAATCGGATGTTTAAATCAATTTATCGGTGAGGGCCCAATTATAAGACTTTTTGAATTTGACACAAATGCGATTTACTTGCAGAGCAAGTTTCATCATTTTTGAGAccgatttaattattttgattcatcATTAAATAAGATGCTGTCAAACTATCAAAAATACGGTACCGAATATGGGTGATTCCAATTAAATTGGTAAACATTTTAAGCTTCACTTCTGTATGCTCAATACAATGACaa

Function

symbol description
pde6b Predicted to enable 3',5'-cyclic-nucleotide phosphodiesterase activity. Predicted to be involved in retina development in camera-type eye and signal transduction. Predicted to be active in photoreceptor outer segment membrane. Is expressed in eye; retinal neural layer; and retinal photoreceptor layer. Human ortholog(s) of this gene implicated in congenital stationary night blindness autosomal dominant 2 and retinitis pigmentosa 40. Orthologous to human PDE6B (phosphodiesterase 6B).

NR:

description
PREDICTED: rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta isoform X1

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K13756 PDE6B; rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220957.1 True 4864 mRNA 0.42 22 5119094 5128226

Neighbor

gene id symbol gene type direction distance location
si:dkey-247m21.3 LOC107706496,LOC107681108,LOC107589286,LOC107591744,LOC107703507,LOC107708508 coding upstream 21897 5076556 ~ 5097197 (+)
ccdc80l2 ccdc80l2,LOC107706489,LOC107589242,LOC107681168,LOC107750362 coding upstream 220509 4894027 ~ 4898585 (+)
fgf10a fgf10a,LOC107706443,LOC107589284,LOC107750480,LOC107703510,LOC107591746,LOC107681114 coding upstream 292330 4811498 ~ 4826764 (+)
rai14 rai14,LOC107681156,LOC107706485,LOC107589239,LOC107750373,LOC107703593,LOC107591710 coding upstream 325675 4761165 ~ 4793419 (+)
LOC122326163 LOC107681122,LOC107589283,LOC107706442 coding upstream 361694 4754626 ~ 4757400 (+)
LOC122326134 hspb11,LOC107591699,LOC107703580,LOC107681190,LOC107706446,LOC107589249,LOC107708534 coding downstream 3979 5132205 ~ 5133306 (+)
si:dkey-30k6.5 LOC107681183,LOC107706501,LOC107708532,LOC107703579,LOC107591696 coding downstream 5519 5133745 ~ 5138828 (+)
zgc:103482 zgc:103482,LOC107708531,LOC107703577,LOC107706502,LOC107681060 coding downstream 10935 5139161 ~ 5141501 (+)
efna5a efna5a,LOC107706503,LOC107589251,LOC107681184,LOC107703575,LOC107708530,LOC106563326,LOC105015058 coding downstream 75238 5203464 ~ 5252913 (+)
LOC122326646 gadd45gb.1,LOC107591738,LOC107589289,LOC107706448,LOC107708506,LOC107681111 coding downstream 161421 5289647 ~ 5291030 (+)
LOC122326722 NA non-coding upstream 4810 5111482 ~ 5114284 (+)
G143926 slc26a1,LOC107589247,LOC107706495,LOC107681097 non-coding upstream 12868 5103857 ~ 5106226 (+)
LOC122326250 NA non-coding upstream 43491 5070327 ~ 5075603 (+)
LOC122326855 NA non-coding upstream 51294 5034930 ~ 5067800 (+)
G143887 NA non-coding upstream 226007 4891138 ~ 4893087 (+)
G143937 NA non-coding downstream 23331 5151557 ~ 5151889 (+)
G144007 NA non-coding downstream 199004 5327230 ~ 5328405 (+)
G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding downstream 237966 5366192 ~ 5374922 (+)
G144081 LOC107708509 non-coding downstream 409974 5538200 ~ 5539464 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding downstream 503815 5632041 ~ 5632851 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 91048 4947584 ~ 5028046 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other upstream 207278 4899490 ~ 4911816 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other upstream 373828 4730603 ~ 4745266 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other upstream 409653 4705157 ~ 4709441 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 594914 4511926 ~ 4524180 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 372877 5501103 ~ 5506433 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other downstream 373807 5502033 ~ 5517936 (+)
sdhaf1 sdhaf1 other downstream 378320 5506546 ~ 5508393 (+)
G144077 NA other downstream 380439 5508665 ~ 5510746 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other downstream 604214 5732440 ~ 5735137 (+)

Expression


Co-expression Network