ccdc80l2 (ccdc80l2,LOC107706489,LOC107589242,LOC107681168,LOC107750362)


Basic Information

Item Value
gene id ccdc80l2
gene name ccdc80l2,LOC107706489,LOC107589242,LOC107681168,LOC107750362
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4894027 ~ 4898585 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220978.1
ACCAGTACTGGCTGTGCTGTTTGAAGTCTTCCCTGTTTTTCTCATATGTTTCTGTTCAACTAAATCCATTTGTGGAATGTCTGTGTACCATGGCTGTTAACCATTAACTTCAACCCAGACTGCTACAGCCTCTTCTCACACCTGGAAAAAAAGCACTATATGACAAATAATAATccaatgcattaataaaaaaatgcttttgtattatactgtatttgttaTAATGTACATTTAGATGTCAATGTAAACatggtgttttaatttttcagtcAGCCTGAGCCACAGTAACTATGCTATTTACAGTTTCTATCTAAATACACATAAGCTTTACACTTTCAGCCTTTTCTTCACTTTCTGGATGATAACATCATGTCTGTTGGACACGCATTTCTCTAAGCAAATGTGTTTCTGATATCTAATTTTAGTTCACCAGTTTTAGGAAAATTTATGTTATTTAGTTTCATACAAAAACTAGTATTGATTTGCATGTAAGTTAGCCTCACAACAAGAAATAGAGTAAGATATCTGGAGATCTGGTCCTAATCATCATAGTTTTAATGTCTGTTTTGCAGATGCATAGAGAGCGAACCAAGACTGGTTTGCCTTtgagaaataatgtaaaaaatgtatgttactCTTATTCAATCTGCCATATCATGCTAAAAATACACTTGTCAAACTGTCAACTGTCAAAATACACACTCTGCAATGATATTGTCCACTAAAGCAACAGCCAAAGGAAATGAAATGTTGACAACTAAGATTAAGCCACAGTGAAGTTGTAAAGGGGCTGGGTTTCATCCTGCCCTTTCATTCTTCTCCTACAACAGCTCATCCTCCAGGCAGACACAAAGTTATGAGGCGCAAGCATGCCACACAGCTTTGAAGCTTAGAAATTCCAAGAGTTTCCTGTAACAAGGTCGAACTCTAATGTGAAACAGAAGTTGCTATTTCTCTCTGCTTCTTCACTCTGTTGGTAAGTGGAGAGTGTGAAGTCTCGATATGCTTCGTCTGTGGATCTTCCTGCTTCTGTTGGCTCATTGGATCAACAGCCCGGTGCTTTCTGCAAAAGGTGGCAAGAAAAAACACCAAGTGAAGAATCAAAGTGGCCCTGCAACTCCCAATGAGGACGTTGGGTCAGATGGAGCCCCTGAGGGTCCATCGGAGTCTGACTTCTTGGCTGATTTTGCTGGGAAACACCGCCTGTGGGTGATCACCGCACCATCGCACAGTGACAACTATCTGCGTATGATGGAGAAGCAGATCCTGGAGTCTGAAGGACTGAATTGTCGCTTGGCTGAGAGAGACACGCTCATTGTCACTATTATTCAAAATGCCATGATGGAAGGGAAAATCCAACGTACGACCTTGCAAGGAGAAGCCACTGTGGAAGTTATGGACTCTGAAATGGTAAGCAAACTTCTTCATTACCTTGAGCTGGAGGACCATACCTTCTCCATGCTGATTCTGAAGAAGAACATGAGGGTTAATGAGAGATTTCCTTACCCGGTTCGCGTTGAGGCCATTCTTGAGGTCATTGACCAATTGCCTGTGCGAAAGTTGGAGAAGGTCGCAAGAAAAGGGTTACCAGTGAAATGCAAGATCACAAAGAAGAGGTTGGTGGTGAAGAAACAGGGTTCTGGCAAGCGTAGGACCTTCAGCCCACAGAGGCATGCAAATACCACATCCATCTTTCTGAGACAGAAGACACGTCTCGACAAAAAGACAACTTTGAGAAACAAAGtacaagatattttgaatggaCATTCGCGCTTCGTCATCCGTAAAAAAACGACAGGCAGCTCAGGCAATGGCAAACCCCCAGGGAAAGCAGGTACAAATTCTGGATCTAGTGGAAATGAGAGGCTGAAGCATGACAACCAGAAGAAATCTCCGGACGGTGACGGACACCCAGAGCCAGAAACAGAAGTGAAAAAAGTTTCGGAAGCAGATAAAATGCATGCTGGTGCACAATCAAATTTTGACACTCTTAATGAGGAGATGAATGGAGAACAAACCGATGACCATTCAAGCTCCAAAAAGAAAGGCAAAGGAAAGGATGGCAAGAAGAAAAAGGGAAAAGGAGGGAGGAGGAAGTCACAACGAGAAGCAGATGATAAGGAAAAGGCAGCTCTAAAAGAATTCATGCAAAACCTCAAAGGAAGAAGAAGACTTCTTGTGATTTCATCTCTAAATGATGTCTCAAGTCAGTACATCAAACAGAGAGATGATAATGAGCTACGAAGCTGTGAGTTTTCCCAAAGAAAGGTCTCAGTTCTGTCCATCATGGGTTCTGAACACAATCCTACACTACATATTCAACACTACCAACAAGattctGAGTCTCCACAAGCATCCCTGCCAGAAAAGTTCAGAAACCCTGAGTTAATCAGTGAGATCCGCAGAGAATATGGGCTGAGCTCCAAAAACTTCTCAATGGTGTTGACTGACTATGACCTAAGGCCTAATCTTAACAGGATTTTCAACAAGCCAACAGCTCCTTCAGATTTACTGGATTACATCGACAACTTTCCATCACGTCAGTCTGAGAAGGAAGAGGAGAGAAAACTTCCATCACCCTGCTCTAAAGCAGAAATGAACCATCAAGAGGAGAACTCGCTTCTGAGGTTTATGTCCAAACGGAGACTTCTAATCATCTCATCACCTACTGTAGACGACTACTCATTCCATCAGCAGCTTCAGGCACTTAATGGACAGGAGTGTCCACTGGGTATTCGTCATTTTGCCTTTTTGAAGATTGTGGGTACTGGATCGACAGCTTCAGGAACAGTGGAGTTTTTTCCATTGAATGGGAAAAGTCAACCTGAGAAGGAGATGCTTTCACGGGATGTGGTGGAGAGTCTCAGAAATCAGTTGAAGATAAACCGTGACTACTTCAGCATGTTGGTGGTGGGAAAGGATGGAGATGTAAAGGCCTGGTTCCCGTCTCCAATGTGGTCCCTGGGAAGCATCTATGACCTTGTAGACTCTATGGAATTAAGACAACAGGAACAGAAACTCCAACAAACTCTTGGAATTCACTGTCCTGAGGAGAATACTGGTACTTACCATGGCTACACAGAAGAAACAGAGGACAGCTACTTGTACCACAGATCTGAGGACTAAACGTcatcaaaacaaagacattaaacatgcatatagtgaacatttgtatatttatcatCCCCATATCATGTGATGCTAAATTATACCTCTTTATTGCAAATCATACCTGTTGTTTCCTGTGTCGCATACATTTTCACTTCCCTGCACTTGGTTGCATATGCTACTATGCTTAAGTATAGCTAAAAGGCATAGCGTGAAattcttgttttaaaaatgctgttgacATTAAAGGATAGTTTTTTAAGCTGTAGAAAATGTCTGAGTGTTTTTAATGTCCTTATGAGTGCTGAGTTACACCATTGTTGGTAactggtaagatttttttgtagtccaaaataagcaaaaatgcttattttggatgtgattaatcataattaagcAATTGACAGTActaattctaaaa

Function

symbol description
ccdc80l2 Orthologous to human CCDC80 (coiled-coil domain containing 80).

NR:

description
coiled-coil domain-containing protein 80-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220978.1 True 3529 mRNA 0.41 7 4894027 4898585

Neighbor

gene id symbol gene type direction distance location
fgf10a fgf10a,LOC107706443,LOC107589284,LOC107750480,LOC107703510,LOC107591746,LOC107681114 coding upstream 67263 4811498 ~ 4826764 (+)
rai14 rai14,LOC107681156,LOC107706485,LOC107589239,LOC107750373,LOC107703593,LOC107591710 coding upstream 100608 4761165 ~ 4793419 (+)
LOC122326163 LOC107681122,LOC107589283,LOC107706442 coding upstream 136627 4754626 ~ 4757400 (+)
amacr amacr coding upstream 164667 4720756 ~ 4729360 (+)
hpse hpse coding upstream 189251 4698726 ~ 4704776 (+)
si:dkey-247m21.3 LOC107706496,LOC107681108,LOC107589286,LOC107591744,LOC107703507,LOC107708508 coding downstream 177971 5076556 ~ 5097197 (+)
pde6b pde6b,LOC107706500,LOC107681163,LOC107708533,LOC108436964,LOC107703582 coding downstream 220509 5119094 ~ 5128226 (+)
LOC122326134 hspb11,LOC107591699,LOC107703580,LOC107681190,LOC107706446,LOC107589249,LOC107708534 coding downstream 233620 5132205 ~ 5133306 (+)
si:dkey-30k6.5 LOC107681183,LOC107706501,LOC107708532,LOC107703579,LOC107591696 coding downstream 235160 5133745 ~ 5138828 (+)
zgc:103482 zgc:103482,LOC107708531,LOC107703577,LOC107706502,LOC107681060 coding downstream 240576 5139161 ~ 5141501 (+)
G143887 NA non-coding upstream 940 4891138 ~ 4893087 (+)
G143872 NA non-coding upstream 31624 4800102 ~ 4862403 (+)
G143827 NA non-coding upstream 141768 4751907 ~ 4752259 (+)
G143826 NA non-coding upstream 142517 4751217 ~ 4751510 (+)
G143751 NA non-coding upstream 304875 4588726 ~ 4589152 (+)
LOC122326855 NA non-coding downstream 136345 5034930 ~ 5067800 (+)
LOC122326250 NA non-coding downstream 171742 5070327 ~ 5075603 (+)
G143926 slc26a1,LOC107589247,LOC107706495,LOC107681097 non-coding downstream 205272 5103857 ~ 5106226 (+)
LOC122326722 NA non-coding downstream 212897 5111482 ~ 5114284 (+)
G143937 NA non-coding downstream 252972 5151557 ~ 5151889 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other upstream 148761 4730603 ~ 4745266 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other upstream 184586 4705157 ~ 4709441 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 369847 4511926 ~ 4524180 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other upstream 507815 4132436 ~ 4386212 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other upstream 680255 4106801 ~ 4213772 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other downstream 905 4899490 ~ 4911816 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other downstream 48999 4947584 ~ 5028046 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 602518 5501103 ~ 5506433 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other downstream 603448 5502033 ~ 5517936 (+)
sdhaf1 sdhaf1 other downstream 607961 5506546 ~ 5508393 (+)

Expression


Co-expression Network