G12859


Basic Information

Item Value
gene id G12859
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 164953 ~ 166160 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU14291
GGGGCATGTTTACCATGGTGTAGCTTCTCCTCTTCTTTTCAAAACAGTTTGAAGACGTCTGGGCATCGAGGTTATGAGTTTCTGGAGTTTTGGTGTCGGAATTTGGTCCCATTCTTGCCTGATATAGGTTTCCAGCTGCTGAAGAGTTCGTGGTTTAACGATGCGTCAAACGTTCTCTATAGGTGAAAGATCTGGACTGCAGGCAATTCAGCACCCGGACTCTTCTACGACGAAGCCATGCTGTTGTAATAGCTGCAGTATATGGTTTTGCATTGTCCTGCTGAAATACACAAGGCTTTCCCTGAAAAAGACGTCATCTGGAAGAGAGCATATGTTGCTCTAAAACCTTTATATACCTTTCAGCATTCATAGTGCCTTCCAAAACATGCAAGCTGCCCATACCGTATGCACTTATGCACCCCCATACCATCAGAGATGCTGGCTTTTGAACTGAAAGCTGATAACACGATGGAAGGTCTGCTTCTTCTTTAGCCTGGAGGACATGGAGTCCGTGATTTCCAACAAGAATGTCAAATTTGGACTCATCTGAACATAGAACACTTTTCCACTTTGAAAGAGTCCATTTTAAATGAGCCTTGGCCCACAGGACACAACGGCGCTTCTGGTTTGTGTCAACTCAGTGTCGGAGAGATGAGAGAGCGAGAAAGCGCAGCTGGTATGGTGTAATTAATCTGCAGGAAATGAGTATCTATTTTTAGAAAAGATCTATTTTTGACAACATTACATTGCACTTAAGTTTATTATTTCAGATGCCTTTTTAAAAGACCAACTGAAAAAAAAAATTATGTTATTTAATAAAATTCAACCCTCCAAAAAGTGACTGCATTACACGCCACTGCTGAAATCAACCCGCATTTGGCGGGTTGGCGAATGTTAATGTCAAATCAATCAATCAATCAATCAATCAGTCAGTCAATCAGTCTGTCTGTCTGTCTGTCTGTCAGTCTATCTATCTTTAACTGGTATGCTATACTCAAAAAGTTGAAAACAATGACTTGAATTGGCATTTATGATGAGAGCAAAACCTTTGGTTTAGTTTAATGCTTTATGTGAGTCAGATGTGCTCAGAAGAGATAAATTAGGAACAGAATATATTTTTATGAAATCTCCAGTGAATCTCGGTTCTCAGGCACAATCCAGCTGCGTGGTGACCACAGTCTGGCCTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU14291 True 1188 lncRNA 0.49 2 164953 166160

Neighbor

gene id symbol gene type direction distance location
CI01000001_00124107_00131285 ELOVL4B coding downstream 33573 122814 ~ 131380 (-)
CI01000001_00113458_00118362 NA coding downstream 46506 111929 ~ 118447 (-)
CI01000001_00105105_00108304 NA coding downstream 55109 104255 ~ 109844 (-)
CI01000001_00001500_00064341 CDH24 coding downstream 99377 708 ~ 65576 (-)
CI01000001_00192545_00195828 FAM46A.L, FAM46AB, FAM46A, FAM46AA coding upstream 25771 191931 ~ 196831 (-)
CI01000001_00218182_00220017 NA coding upstream 51497 217657 ~ 220116 (-)
CI01000001_00222940_00227735 NA coding upstream 56640 222800 ~ 228007 (-)
CI01000001_00238241_00249437 NA coding upstream 72081 238241 ~ 249437 (-)
CI01000001_00305883_00333574 FYCO1A coding upstream 139331 305491 ~ 333798 (-)
G12856 NA non-coding downstream 10673 153967 ~ 154280 (-)
G12846 NA non-coding downstream 66048 98578 ~ 98905 (-)
G12845 NA non-coding downstream 67134 97338 ~ 97819 (-)
G12844 NA non-coding downstream 67755 96898 ~ 97198 (-)
G12866 NA non-coding upstream 12615 178775 ~ 179035 (-)
G12868 NA non-coding upstream 18696 184856 ~ 185057 (-)
G12877 NA non-coding upstream 36838 202998 ~ 203217 (-)
G12878 NA non-coding upstream 37332 203492 ~ 203706 (-)
G12880 NA non-coding upstream 42989 209149 ~ 209358 (-)
CI01000001_00362143_00378213 NA other upstream 201082 361614 ~ 378213 (-)
G14104 NA other upstream 1597509 1763669 ~ 1771468 (-)
G14219 NA other upstream 1828050 1994210 ~ 1994898 (-)
G14228 NA other upstream 1889814 2055974 ~ 2056478 (-)

Expression


Co-expression Network