ndr1 (ndr1,LOC107706449,LOC107681142,LOC107589292,LOC107708517,LOC107591687)


Basic Information

Item Value
gene id ndr1
gene name ndr1,LOC107706449,LOC107681142,LOC107589292,LOC107708517,LOC107591687
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5361958 ~ 5365041 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220994.1
ACTAGAATATATTGTCATAACATGCTGTAATTTGTCAAATCAAGCAGCCAAACGAGGCGGTAACATGTCAAAAATGTGGGGATTTTCAATGAAATAATGACTATTTTTATGTCCTTCTGATACAATGAAAAGCCATAGAAACAAACTTCCTCTATTTTCATTCAAACTAAGAAATAATCCAGCAGTCGGGGTGTTTTTCTCCGTTTAATCAAAGTGACATTGATGAACAAATGTAGTCCactaatattattgtttaagtacattttcaaaaggaCCTCCAATACACAGCGCTCGAGGAGAAGAATTAATGTTTTCACACCTTTTGACGCACAAAAGACTGTTGGTTTCGATACACAACGACCCAGGGACATGTATCCCTTTATGGATCACAGGGGCACTTCAAAGACCCGAAGGACCTCACAGACCATCAAAAGACCGCAAGTTTCTATAAGTGAATTTAGATGGCCAGCCAGCACTCATAACGTTCACTTTCCAGAGGACGGTGTAGAAGAAAGGTCTCAGGGACAGtgttcctcctcttcctcctcagcGCGTTGGATTATAACCTAGACTGGACATGAGGCGGTTTACCTGCGGGGTCCTGGGCGCAGTCCTCGCGCTCTGGGTCGGTCTGGTGAGCTCCACGGCGTCGTTCCCCGGGTTCCACGAGGCGTTCAGGAACGGGATGAGGGCACCTGGCAGGAGCGGCGGAGGTCAGGCGGGTCACGGGCGACACACCAACAGATATCCGCTGTATATGCTACATCTCTACCGGACCCTCCTGACCGGAGACGACAAACATTTGAGTCACGAAAATCCAACTCTTTATGAGTCCGATTCGGTTTTGAGTCTCGTCGCCAAGAGTTGCCATCAGGTCGGCGACAAACTAGCCGTGACATTCGACATGTCCTCCATATCAGCGAGCGACAACGTCCAGCGGTCCGAGCTTCGCGTCCGCCTTCCGGCGTTCGCCTCGGAGATGGAGGTGGACATTTATCACGCGGCCAAACGAGAGTGCGACCGGAGCCCTTGCGACGAAGTACGGATTCACCTCGGCACTGTTAAAGCCAAACTGATCGACTCAACCTCCTCGTGGAGGGTCTTCAACATCACGGCCCTGCTCAAGTACTGGTTGCACCAAGGTGAGAGCGTGTCCTCAGAGGAACCCGTTCAGATGCCCGCGAGATCCGAGGGCGAGGGGCATCTGACAGCCAACAGAGTCATGATGGTGGTTTACTCCAAGCAGAACCGGGCGAAGACGTCCACCCTCATTCAGACCGCCGAGCACTCCAAGTACGTAGCTCTGGACCGGGCCGCGGGCGGAGGTGAACCTGCGCCTCGGCGTCACAGGAGAAACCACCGGACCGACGACAGAGTGCGCGATGTAGCAGCTAGCCTCATTCCCGGTGCTTCGCAAGACGAAGGGGAGAAGAAATCTCTCTGCAGGAAGGTGGATATGTGGGTGGACTTCGATCAGATTGGTTGGAGCGACTGGATCGTTTACCCGAAACGGTACAACGCCTATCGGTGTGAAGGGAGCTGTCCTACGCCTGTAGACGAAACCTTCACCCCCACCAACCATGCCTACATGCAGAGTCTTTTGAAGCTGCACCACCCAGACCGCGTCCCGTGCTTGTCCTGCGTACCCACCCGTCTGGCCCCACTCTCAATGCTCTACTACGAGAACGGCAAGATGGTCATGAGACACCACGAAGGGATGGTTGTAGGAGAATGTGGCTGCCACTGAGTCTCCAAACCACAAACGAACTCAACGCTAGCACTTCGGATATGTTCCTTTAACCTGAAATACATATTTAAgcacaaatgaagataaatTGCTTTAATTTGTACAGCGTTTTCACTTGGAGGTCATGAGGTATCCTGCACTGAGGCACCTGGATTACTGAATGCTATTTTTGAAAGCTTTGTGTGTTTGCCTAATTTGTAAATAGCAGAGTATGTAAATTACCAAATGTAATAAAGCGTTTTCATAATGGTAATGCATTTTGTGTGCgcgtgcatttttgtttttttatgaggAAATCAGCAGCGTCAGACAAATAAGGAAACCGCTCATCAATTCTCtggtgtttattgtttttttttttttaaatgcttaaatgtctTTTCAGAAATAACAGGGCAGTTTTAGAGAActtcacagcaaaaaaaaaaaaaagcattttacattCTGTTGAATGACACTTTAGGTGAGCATACTCATTAGGATAAACAGAAATTAGATTTTACGTTACAAAATTATCAATGCCAAATGGAAAGTGG

Function

symbol description
ndr1 Predicted to enable cytokine activity and type I activin receptor binding activity. Acts upstream of or within several processes, including animal organ development; positive regulation of fibroblast growth factor receptor signaling pathway; and regionalization. Part of protein-containing complex. Is expressed in embryonic structure; ovary; posterior lateral line primordium; and unfertilized egg. Human ortholog(s) of this gene implicated in visceral heterotaxy. Orthologous to human NODAL (nodal growth differentiation factor).

NR:

description
nodal homolog

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0043010 camera-type eye development biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0021854 hypothalamus development biological_process
GO:0048263 determination of dorsal identity biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:0040007 growth biological_process
GO:0008595 anterior/posterior axis specification, embryo biological_process
GO:0048382 mesendoderm development biological_process
GO:0060061 Spemann organizer formation biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220994.1 True 2283 mRNA 0.48 3 5361958 5365041

Neighbor

gene id symbol gene type direction distance location
htr1ab htr1ab,htr1a,LOC107589255,LOC107703504,LOC107681135,LOC107706510,LOC107708525,LOC107591737 coding upstream 21820 5338356 ~ 5340138 (+)
c7b c7,c7b,LOC107681132,LOC107706508,LOC107703570 coding upstream 39861 5315013 ~ 5322097 (+)
LOC122326643 oxct1b,LOC107703571,LOC107591691,LOC107681133,LOC108439614,LOC107711896 coding upstream 47549 5308926 ~ 5314409 (+)
LOC122326646 gadd45gb.1,LOC107591738,LOC107589289,LOC107706448,LOC107708506,LOC107681111 coding upstream 70928 5289647 ~ 5291030 (+)
efna5a efna5a,LOC107706503,LOC107589251,LOC107681184,LOC107703575,LOC107708530,LOC106563326,LOC105015058 coding upstream 109045 5203464 ~ 5252913 (+)
rictorb rictor,rictorb,LOC107681152,LOC107589259,LOC107703559 coding downstream 78070 5443111 ~ 5466387 (+)
lifrb NA coding downstream 101473 5466514 ~ 5474409 (+)
ccdc61 ccdc61,LOC107681161,LOC107706517,LOC107589261 coding downstream 110193 5475234 ~ 5481781 (+)
itpkca itpkca,LOC107706518,LOC107589262,LOC107681162,LOC107703557,LOC107591683,LOC107708494 coding downstream 117446 5482487 ~ 5489762 (+)
LOC122326433 LOC107589295,LOC107681110,LOC107706452,LOC107703460,LOC107591721 coding downstream 124837 5489878 ~ 5499593 (+)
G144007 NA non-coding upstream 33553 5327230 ~ 5328405 (+)
G143937 NA non-coding upstream 210069 5151557 ~ 5151889 (+)
LOC122326722 NA non-coding upstream 247674 5111482 ~ 5114284 (+)
G143926 slc26a1,LOC107589247,LOC107706495,LOC107681097 non-coding upstream 255732 5103857 ~ 5106226 (+)
LOC122326250 NA non-coding upstream 286355 5070327 ~ 5075603 (+)
G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding downstream 1151 5366192 ~ 5374922 (+)
G144081 LOC107708509 non-coding downstream 173159 5538200 ~ 5539464 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding downstream 267000 5632041 ~ 5632851 (+)
G144129 NA non-coding downstream 319787 5684828 ~ 5685097 (+)
G144130 NA non-coding downstream 340499 5705540 ~ 5706835 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 333912 4947584 ~ 5028046 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other upstream 450142 4899490 ~ 4911816 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other upstream 616692 4730603 ~ 4745266 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other upstream 652517 4705157 ~ 4709441 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 837778 4511926 ~ 4524180 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 136062 5501103 ~ 5506433 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other downstream 136992 5502033 ~ 5517936 (+)
sdhaf1 sdhaf1 other downstream 141505 5506546 ~ 5508393 (+)
G144077 NA other downstream 143624 5508665 ~ 5510746 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other downstream 367399 5732440 ~ 5735137 (+)

Expression


Co-expression Network