pcf11 (LOC107681148,LOC107731451,LOC107548175,LOC107718956,LOC107551645,LOC107703528)


Basic Information

Item Value
gene id pcf11
gene name LOC107681148,LOC107731451,LOC107548175,LOC107718956,LOC107551645,LOC107703528
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 6611003 ~ 6620143 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220997.1
CGCGCAGTCTCCGTTGAAGTACGACGGACATTTTGCAACGCTTTATCCAAACAGAAAATATCGTTATTCAAAACGCAAGACACGAGGAGTCACGGCACTACATTCGACGTACAGAGGAAACCAAGAGGAAATACAGATGTTTAAGAGGACTGTGTTGCAAGTAATGTTTGTATAATAGTTTAAATTGTGTGGCGACAGCCTTCGACTCAACGGCTCAAAGATGTCGGACGAAGGCGCGAGGGAGGACGCCTGCCGCGAGTATCAGTCCTCGCTGGAAGATCTGACTTTCAACAGCAAACCGCACATCAACATGCTCACCATTCTAGCCGAAGAAAACATCCAGTTCACCAAGGATATCGTCGCAATAATTGAAGCACAAATTGCCAAGGCACCTGCTGTTGAGAAGCTCCCAGTTTTGTACTTAGTGGATTCCATAGTGAAGAATGTTGGAGGGGAATACCTTGAAGTGTTTGCTAAGAACCTAGTCAATTcctttatttgtgtatttgagAAGGTGGATGAGGCCACTAGAAAAAGTCTCTTCAAATTGCGTTCCACATGGGATGAAATTTTCCCCTTGAAGAAACTATATGCACTAGATGTGCGTGTGAACTCAATAGATCCTGCCTGGCCTATTAAACCATTGCCACCAAATGTGAATGCCAGCATACATGTCAACCCCAAATTTTTAAAACCGACTGAAGAAACCTCTCCGAAACCTCCTCCACCACAACCTCCAGCTCCAAGCTTGACACAAGAGCAATTGATAAGGCAACAGTTGCTTGCAAAGCAAAAACAGTTGTTAGAACTTCAACAAAAGAAGATAGAACTAGAACTTGAACAAACGAAAGCTCAGTTGGCTGCCAGTCCTGCTGTTTCATCAAACCACCAAGCCGGTGCTCCTGGACGCTTCAATGTCTCGTCACAAGCCACTCATACGGTTCCTGCCTCACAGACAAAACCTTGGCTTCCAGCACCATCAGAAAAAATAGCAACCAGGGATCCTAGATTAAACAGACTTGGTGCAACTGTAAATGCAAAGGAACAAGTGCATAAGAAGGAAAGTCAGGTCACACCAAACTTTCCGACTACTTCAGAAAAAAGAGGACAAGTCTTAGTTGAAAGACAAAGTAAGTTGGAAAAGTTAAGGATTCCCAAAAAGGATAACTCTGCAGTTGAGGAAAAACATAAATCCAAGTCAGTGTCACCATCTGGAAAATGTGTTGTCGTCAGACCCAGAGCGATTGAGTCTGAGCATTCAAAAACTGCTGAAGTGAATAAGAAGGACCCAAGGCTGCATAAGGAGATGCATAACAGGACCGATTTAAAAGATGATGATgtcagagagaagaaaagaagttCAGAAAAGAAAGATAGGGATGAAAGTATCAAAAACGTGGATCATCAGAAGTCCAGCAGTGCTAGGGGCAAGCTTATAAATGGCTCTGTAAACAAGCATGAAAGACTCGAGACATTTCTGAAACAAGAAATTAAAGTCAACAAAGCAAATGTCAGAAAAAGGTCTCGGTCAAGATCACGGTCACCACCACTGCATTCTcctaaaagaaaagagagacgGCCATCTCCGAAGAGAAAAACCAGGAGTATTACTCCACCTCTCAAATCTGGAAAGGCTAGGATAAGTAAACATTCACATAATGATGATGCTTTTCCACAGTCAAGTCTTAGAGATGAACGAAGCGTCAAGAAAAATGCCCCAGAACCAAGACGATCAAAAAGGCCACTTGACGATAGAGCTGCTGATCAGAAAGATGGACCACAGTTGAGAATTTCTCCCGCGGAgcataaagacataaaagataGCAAGAGATGGAGGAGTGGGTGGGAAGAGAATAAACATCCTAAACAGTCAGATTCAGATCTATCCCATGGACGACTAGGCAACCAGAGACACAAGACTTGGAACACTAATCAAAGACCGTCCACACCTCGTACACCTAAACAACATCGCTTAAGTGTTGATAGCAACATACAAATACCAGAAGCACTTAATACTGCAAGTAAACGGGACCTTTTAAGAAAGgcTAGCAAAAGACATGCTGATGGAGAAATATCCAATGATGAATTCCTGAATGTAGCCCATCAAATAAATCAAGTTTTTCAGTATCAAGAGGAAAGACAGAGGTCTGACTCTTGGGATGAGTCGTGTGATGAGGGAGTATATCAGtcaaaaaagaaacatgaagCCATTTCTGATGCACAGCTTTCTTATCTTGAACATAAATCAAAGCTGAGAAGAACACAGCTTCAGCGTCCAGTGCAAAAAGAGGGCCAGTTTCCTTTGGATGAAATTCTTTATCAGCCTCAACATGAAATGTCTGAACAATACAGTGAAAGCTCAGGAGTGCATAAAATGACTGGTGATCCCATAAAGCCTGACCGTGAAGATCCTAGAAGAACCAACAGGCCTCCATCATGTACAGGTTCCACATTCAGAAATTCACCAAGTCCAGTCAACTTAGATGGGACCTGTGGAAAATCTGCAGCACCACCATTTGAACGGTCATCATCTCCAGTTGAAATGGATCAACAACCAGGGGACATTAGTCCACGTTTTGAAAGTCCCAACAGTGTGCACTCTGGTACAGGTCCAGATGATGGTCCTATAAGTGTAGAAGGTCTTCCAATGCAAGATCATTTCTCTGAACTGGGAAGAAGTGGACGAAACCATGAAGAATCTCCTGGGAGTACACCAACGCACTCAACAGAAGGATCTATGGCACAGGCAAACCCACCACGGCATGAAGGACCAAATATTTCTCAACGATTTGATAGATATAAGAGTTCTCAAGCTCCTTTTGATGGTCCACCAAGCCACATGAGGGAGCAGAGGTTAGATGGTCCTCCAAGACCATATGCTCCTTCTCGGTATGAAGGCAATGCAGGCGGGTTTGAAGGGTCTGGTGGACCCGTAAGGTTTTCTGGACATCGCTTTGATGCCCCTCACCGATTTGAGAGATTTCCTAAAGCGCATGAAAGACCTGTAAGATTTAACAACCCACCAGTATCACACAGGCCATTGAGGTACACAGAGCCTCACAACATGAGATTTGACTCTCAAGCCCCGATTCATTATGACCACTCGATGCACCAAAACAGATTTGTTAATCCAGCAAGGTTTGATAATTCTCACATGCAACACGGTCCATCAGGATACGAGGAACCACGGTTCTCGGCTAGACTAATAAATTATGATGAACAGCAGGGTGCAGTTAGATTTGATAGTCCATCAGGTGGAATGCACTTTGAGAACCCTGTGCAGCCTGAACCTTTAAGATTTGATGCACCGCCTGTCATGCCAAGATATGACCCACAAGGTCCTCCAAGATACTGCAGTCCAAATATTGCAAATCAGCTGAGACCACAGGAGCCAACAATGTATGATCAAACTCAAGGTCAAGCTCCTGTGATAAACCCTGTTCCACCACCTAATTTTAACATGCCACCCATAAACACGTATGGTGGCCCAGCCCAACAGTTTACCATGCAGTCTAATGTTTCTCAAGCGTCTAACTTCAGTGTGTCAGGTCCTACATCATCAGATTTTCAAGGTTCATTTAGACCTGCTTCATTCCCTGGTCCAGGTGTTGGGAATGTTCCTCAGCCTATCATAGGAGCTCAACCCTTCATGCCACCAAACCAAATATCTTTCCAGCCTGGTTCCCAGTTTCAGCAGCCTGAGGCCGAGCCACTGAGGCAAATAGATGTGAACGATCTGTTGTCTAAACTCATATCCACTGGAATAATAAAACCTGCACAAACAGACTCAATCACTGACTCTACTTCAGCAAGTCAGACTTTATCTGTGcctgaagaggaagaggaggaggaacaGGAGGAAGATGAAAGTGTCCCAGATCTGACTGGCTTCGTTTTGGACGAAATGAAACTGAGACATGACAGCATCATCACCAAACTGTATACAGGAATCCAGTGCTATTCCTGTGGCATGCGTTTTACTGCATCTCAGACGGATGTGTATGCAGATCATTTGGACTGGCACTACAGGCAGAATCGTTCAGAGAAGGACATCAGTAAGAAAGTTACACACCGTCGGTGGTACTACACTCTGACGgaTTGGATTGAATTTGAGGAAATTGCAGATCTTGAGGAGAGGGCAAAGAGTCAGTTCTTTGAAAAGGTTCATGAAGAGGTTGTGCAGAAAACTCAGGAAGCAGCCAAAGAGAGAGAGTTCCAGAGCGTAAAGGCTGCAGCAGATGTCGTTCACGAGCTGTGTGAGATATGTCAGGAGCAGTTTGAGATGTACtgggaggaggaagaggaagagtgGCACCTGAAGAATGCCATCAGAGTCGATGAAAAGACATATCATCCCTCATGCTACGAAGACTACAAAAATACATCCTCTTTTGTGGACTGCACACCTTCACCCAATAAAATGCTTACAGAAAACCCTTTAACAGCTTTCATAAAACAAGAGCAGGGTGATGAGGCGTCATGCTCCAGTATTAAAGAAGAGCCCCCCGAGGATGATACAGAAGCACCAACGGTAAAAGAGGAGGTTCAGGTTAAGTTAGAAGAAGAAACACAAACCAGTGCAATTATTTTCTAACTATGCTGCTCCTTAGCCACCTCTTTTTTGTGGTTACTTTAGCTggtcttttgtgtttttgtaaagaaggatatttttatattgcagaGCTCTGGGGCCGGGACCTCAGCTAGtcactttaaatacatttttgtatttgtatttgccTGCACATTTCAGGTTTTTTTGCCATGTGAATGCCCAATGAAATGTACTGTGAAATATGTACGTTTGGggtaaatgtatatgtataatttaatttataaataaagatatttttggtaTTCTTTGTGTagtattgataaaaaaaaaaaaagaatttgaattagttttttggGTTCTCGATgagatattttgttttttgacttGGAAATGGTGGTTGGATACTAATTTATGaatgactttttgttttgcCTCCAAAAAACAAGGGAAAGCCCTTTTCAGTCACTGATAATTCCTTAAATCCAGGATTGGGGCTGATTGTaaattaacataatttactATGAGAATTTCCCTGACCTCAATATGTAAATAGTTATCTCGTTTACTACTGTATTTGATTCAGAGTAATGTGTTTagttgaaaatggaaaaaaaaaacatcagggtgggtttttttctctttttgcagAAATTCAAAGAGCAATTTTtggtttattcagaatattcaataaaagaaatttGAGGAAGAAATAGCGTCTTGTGTGTAAAGtgattattgtgtgtttttgactgGTTTAAAGTTGTCAGTTTTATGCATAATCCTAAATAAAGTTTCAGTGCTAATGAAA

Function

NR:

description
pre-mRNA cleavage complex 2 protein Pcf11 isoform X2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG:

id description
K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220997.1 True 5363 mRNA 0.42 16 6611003 6620143

Neighbor

gene id symbol gene type direction distance location
ddias LOC107731438,LOC107681101,LOC107603284,LOC107718991 coding upstream 250 6607753 ~ 6610753 (+)
birc2 birc2,LOC107703529,LOC107731450,LOC107718959,LOC107551643,LOC107548174,LOC107681145 coding upstream 17041 6585713 ~ 6593962 (+)
arhgap42a arhgap42,LOC107703530,LOC107551641,LOC107718960 coding upstream 42980 6546071 ~ 6568023 (+)
bud13 si:dkeyp-69c1.6,LOC107703532,LOC107718963 coding upstream 82448 6524949 ~ 6528555 (+)
LOC122326078 LOC107718966,LOC107551640,LOC107703534,LOC566907 coding upstream 95124 6513516 ~ 6515879 (+)
alg8 alg8,LOC107731443,LOC107719005,LOC107703477,LOC107548176,LOC107551646 coding downstream 4788 6624931 ~ 6628770 (+)
htr3b htr3b,LOC107548134,LOC107681116,LOC107731437,LOC107551604,LOC103041566 coding downstream 94862 6715005 ~ 6720847 (+)
htr3a htr3a,LOC107731461,LOC107681109,LOC107548135,LOC107719004,LOC107703474,LOC107551655 coding downstream 102023 6722166 ~ 6727215 (+)
LOC122326099 zw10,LOC107703521,LOC107731459,LOC107718948,LOC107551653 coding downstream 289415 6909558 ~ 6915682 (+)
LOC122326102 dlat,LOC107731458,LOC107718949,LOC107703522,LOC107681164 coding downstream 296013 6916156 ~ 6924635 (+)
G144348 NA non-coding upstream 3657 6606847 ~ 6607346 (+)
G144347 LOC107731449,LOC107681146 non-coding upstream 4973 6605481 ~ 6606030 (+)
G144317 LOC107703481,LOC107551613 non-coding upstream 73862 6497701 ~ 6537141 (+)
G144329 NA non-coding upstream 77424 6532040 ~ 6533579 (+)
G144308 LOC107706534,LOC107548126,LOC107681195,LOC107703486,LOC107719012,LOC107551634 non-coding upstream 148070 6462650 ~ 6462933 (+)
G144353 NA non-coding downstream 2321 6622464 ~ 6623576 (+)
G144351 NA non-coding downstream 16980 6637123 ~ 7018763 (+)
G144370 NA non-coding downstream 76566 6696709 ~ 7085923 (+)
G144367 zbtb16 non-coding downstream 78849 6698992 ~ 6736633 (+)
G144371 LOC107731460,LOC107603286,LOC107681181,LOC107718946 non-coding downstream 82759 6702902 ~ 7091450 (+)
cfap300 si:rp71-1p14.7,cunh11orf70,LOC107731447,LOC107548131,LOC107681129 other upstream 25969 6582746 ~ 6585034 (+)
G144330 NA other upstream 75209 6534100 ~ 6535794 (+)
G144152 NA other upstream 761950 5847941 ~ 5849053 (+)
LOC122326980 tnksa,LOC107706493,LOC107681059,LOC107589272,LOC107708542,LOC107703465,LOC103369208 other upstream 811301 5794762 ~ 5799702 (+)
LOC122326918 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 other upstream 869098 5735913 ~ 5741905 (+)
anapc13 anapc13,anc13,LOC107756075,LOC107693524,LOC107561055 other downstream 1287321 7907464 ~ 7909027 (+)
LOC122326775 si:dkey-183i3.9,LOC107715278,LOC107669329 other downstream 1587660 8207803 ~ 8211125 (+)
si:dkey-183i3.6 NA other downstream 1596832 8216975 ~ 8221572 (+)
G144746 NA other downstream 1947892 8568035 ~ 8568673 (+)
tmsb NA other downstream 2058148 8678291 ~ 8679513 (+)

Expression


Co-expression Network