atp2a2b (atp2a2b,atp2a2,LOC107708347,LOC107556944,LOC108444117)


Basic Information

Item Value
gene id atp2a2b
gene name atp2a2b,atp2a2,LOC107708347,LOC107556944,LOC108444117
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3514033 ~ 3542738 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221006.1
ACACCCTTCTTCATCTGGAGTGACGTCCAAACAGGGTCAGCTGATCCAAACTGACGTGACGAAGAAAAGTCAAAGGAAGAAACGGGATTTCCGGAGTCCGCGCAGCCAATGAGCGCATTCCACATGCGGACAGCGAGAGCGGTGCATGCGGATCAGGAGAGCGGCAGAGCGGCGACACGCGATTGGTGCTGATGGTGCTAGAGCTGCGAACACCGGCAGTGTGCTGCGGTCCACGGGAATGAGCCGAAAGACTAGTTAAGGGCTTCGTTTGGTAACCTAGCGCATCGTGAGGACAGCGGGACTCCCAGCAGGCATCGATAAAACTTAAAAACCGAGAACGACCAGCGAGTTTGCGATGCGCGTTGTGTAATTTTTGCTCGAATCAGTCCGGGTTCGTAACTTTTCTTCTCCTTAAACGCCCGAACCGCACAGTTAACGTCGGGTTTGATCGTGTGCCGTTTTTCTGAGGTCACTACGGTTGTTTTTGGATCAAGTTTTTCGTGGGTCCGAAGGTCTTGGGAGTCAGGACCGAAGGCTTTGAAGGAGCCCGCTTGTGTGGGGGGTTGCGAGTCCGTTCATAATCGGCGTGTCCGTCCGTCCACGATGGAGAACGCGCATACGAAAACCGTGGAGGAAGTTTACAGCTTTTTCGCCGTGAACGAGAGCACGGGGCTCGGCCTGGAGCAAGTGAAGCGTCAGCGGGAGAAATGGGGACCGAACGAATTGCCTGCGGAAGAGGGAAAATCGCTGTGGGAGTTGGTTGTGGAGCAATTTGAGGATCTCTTAGTTAGGATTCTTCTCCTGGCAGCTTGCATATCTTTTgtaCTGGCCTGGTTTGAAGAGGGAGAGGAGACCATCACAGCCTTTGTGGAGCCTTTTGTAATATTACTAATTCTTATAGCCAACGCCATTGTAGGTGTCTGGCAGGagagaaatgcagaaaatgCCATTGAGGCCCTCAAGGAGTATGAGCCCGAGATGGGCAAGGTCTATCGCCAGGACAGGAAGACCGTACAGAGGATCAAAGCCAGGGACATCGTACCCGGGGACATTGTGGAAGTTGCTGtGGGTGACAAAGTTCCTGCTGACATTCGCTTGACTTCAATCAAGTCAACGACCCTGAGGGTGGACCAGTCCATTTTAACAGGAGAATCTGTGTCAGTGATAAAGCATACAGACCCTGTCCCTGACCCTCGTGCTGTGAACCAGGACAAGAAGAACATGCTCTTCTCTGGTACCAACATTGCTGCAGGTAAAGCAGTAGGCGTAGTGGTCGCCACAGGTGTGAACACTGAAATTGGCAAAATCCGTGACGAGATGGCATCCACGGAGCAAGAGCGCACGCCGCTGCAGCAGAAACTGGACGAGTTCGGCCAGCAGCTCTCCAAGGTCATCTCTCTCATCTGCATCGCTGTGTGGATCATCAACATCGGACACTTCAACGATCCTGTTCACGGCGGATCGTGGATCCGCGGGGCCGTGTACTACTTCAAGATCGCCGTTGCTCTAGCTGTGGCCGCCATCCCGGAAGGCCTGCCCGCCGTCATCACCACCTGCCTGGCTCTGGGCACCCGTCGCATGGCCAAGAAGAACGCCATCGTACGCTCTCTCCCCTCCGTGGAGACCCTCGGCTGCACCTCCGTCATCTGCTCGGACAAGACCGGCACCCTCACCACCAACCAGATGTCCGTTTGCAGGatgTTCATTGTTGATCAGGCAAATGGAAACAACTGCTCTCTCAAAGAGTTTACCATTTCCGGCTCCACATACGCCCCTGATGGACAAGTGTTTCATGAGGGTAAACCTGTGCGATGCTCCCAGTATGACGCTCTGGTTGAAATGGCCACCATCTGTGCTCTGTGCAATGACTCGTCTCTGGATTACAATGAGGCCAAAGGTGTGTACGAGAAGGTGGGTGAAGCCACAGAGACTGCACTCACCTGCTTGGTGGAGAAAATGAACGTATTTGACACGCAACTGAAGGGCCTTTCCAAGGTTGAGAGGTCGAATGCTTGCAACTCGGTCATCAAGCAACTGATGAAGAAGGAATTCACACTGGAGTTCTCCCGAGACAGGAAGTCCATGTCGGTCTACTGCACTCCCAACAAAGCTCACTCCTCCATTGGCAAGATGTTTGTTAAGGGTGCTCCAGAGGGAGTGATTGACAGATGCACGCACATTCGTGTAGGTGGGAACAAGGTTGCACTGACAGCAGGCATTAAAGAGAAGATCATGTCTGTGATCCGGGAGTACGGCACAGGACGTGACACACTCCGCTGTCTTGCTCTTGCCACCCGAGACAACCCATTGAGTAAAGAGAGCATGGCACTGGAGGACTCAAGCAGATTCATTGAGTATGAGacggACCTGACCTTTGTGGGATGTGTGGGCATGCTGGATCCGCCCAGAGCTGAGGTGGCAGCTTCCATCAAACTTTGTCGTCAAGCGGGCATCCGAGTCATCATGATCACGGGCGACAACAAGGGCACGGCTGTCGCCATCTGTAGGCGGATTGGAATCTTTGGGGAGGACGACGATGTGTCACGAATGGCCTACACTGGCAGAGAGTTTGACGATCTGTCTGCTGCCGCCCAGCGAGAGGCAGTGCTCACGGCCCGTTGCTTTGCCCGTGTTGAACCATCTCACAAATCCAAGATTGTGGAGTTTCTGCAGTCCTACGATGAGATCACTGCCATGACTGGAGATGGTGTAAATGATGCACCTGCTCTGAAAAAGGCTGAAATTGGCATTGCTATGGGGTCAGGCACAGCTGTGGCTAAGACTGCTTCTGAGATGGTCCTGGCTGACGATAACTTTTCCACCATTGTGGCCGCTGTGGAAGAGGGTCGAGCCATTTACAACAACATGAAACAATTCATCCGCTACCTCATCTCCTCAAATGTCGGCGAGGTGGTCTGTATTTTCTTAACGGCAGCTCTGGGCTTCCCCGAGGCTCTGATTCCAGTTCAGCTTCTGTGGGTGAATCTGGTGACCGACGGTCTGCCTGCGACTGCGCTGGGCTTCAACCCACCCGACTTGGACATCATGAGTAAACCCCCTCGCAATGCCAGAGAACCTCTCATTTCTGGATGGCTCTTCTTCAGATACCTGGCCATTGGCTGTTATGTGGGTGCTGCTACTGTAGGTGCTGCTGCGTGGTGGTTCATTGCTGCTGAAGATGGGCCCAGAGTCACCATCTATCAACTGAGTCACTTCCTTCAGTGTGCACCAGACAACCCTGAGTTTGAGGGTCTAAAGTGTGAAGTGTTCGAGTCTCCCTATCCCATGACTATGGCGCTGTCTGTACTAGTCACCATTGAGATGTGCAACGCCCTCAACAGTGTTTCAGAGAACCAGTCTCTGCTACGCATGCCCCCCTGGGAGAACGTGTGGCTGCTTGGAGCCATCTGTCTCTCCATGTCCCTCCACTTCCTTATCCTTTACGTGGAGCCACTGCCGATGATCTTCCAGATCACCCCGCTGAACTTGACCCAGTGGCTTATGgtgttgaagatctccctgccTGTCATCTTGCTGGACGAAGTGCTCAAGTTCGTGGCCAGAAACTACCTGGACAAGCCCAAAGACCTGGACAATCCCAAGGGCAAGGCCTGCTCGCTTAGCACCTGCACTGAGGGCATTTCCTGGCCCTTCGTGGCTCTCTCACTCCCCCTGGTGCTGTGGATCTACAGCACTGACACTAACTTGGCCGAAATGTTCTGGTCTTGACTGAAATGAGTACAGATGTGTGTAGATAGTGTGTacgtgtgtctgtatgtgtggtTGTGCGTTTAAAGTGTGCCTCCGCAACAGAGAATGTGTACGAGAAGGACAGGATTAACTCAAAAATAACCGTGATATAGaaatataacctttttttttttttttttttaacatgtccAGTGGGGATTGAGGAAACCATACAAACCTGAAGTCTTCAAGTATTAGCGACCattggtttatttttgttattgcatttttttaatcatttgtttaatGTCTTATTTCAAACCATTAATATCAATTATGATGATATCAAATTTGTTTTGGCTCCAAATTATGTTTAAATGGCTGAATGGAGGGGGAAAGGTGCTTGTGTACAGACATTTAACACTATTTTATGCAATTGTtcatttgttgttatttgttcAATTTGCTAACAGAGCAGAGTGGGTagggcagaaagagagagatcaaGACAGAACTGTTTACTTACGTTTACCTTTGTGTCTTCGCCGTGAACATCGCTCAGAGCCAATGGACAAGCACAGTGTTTCAAAGCAGCATGGGAAAGAGAGTGCGGGACTGAATGTTTGAATGCTTCACGGTCAAATCCTCAGACGAAAGCTGCATGTTCtgtattttgcatgcattttgtgtggTTTTTCCACTTATGATTTGTACCTGTATGTCTTTCCTGTAACAACTTCCATTTTATGGGTATACATTGTGTTTCCACTATTACATGACACTTTTGATTAGTAAAGCCAGTCTTTCTGCACTAGGCAGAGTACAGCTACCTCAGGACTGTCAGATTAGACTCTCTCTGGTTGCTCCCCCCCCCACTTAGCTTTACACCGCTTGTACACATTAATGCATGAGGTGCGCCTCTATTTGATGATAAACAGAACTCAGATTCTTTTGGCCCTAACTAATCtcttaagtttttttgtttgtttgtttttcactgtattttataaCTGATTGAACTTGCATTAACTTAATTTagtggttttgttttggggCAGGGGTGGGTTGGACAAAAGATGTAAATGTTACCGTTTAGTGGGTAAGGCCAGAGACAAAGGAGTATAAAATTCAACCAGCAAAGGTTTAGgtgttgcattcaaaatatgaattttacagtgcaaaaccaaaatgtttcatgctactttttttttctacttttaggGAAATACACTCATGAaccatttgaattaaaatgcgTGTCTTCATTTTACTAGCTGGTCTGTTCCTGTGATGCAACAGGGCAAGTTTTAGGAACAAATATACttgaataaatgaaattgaTGTACAGAGATTTAGTCGCACAGCTGAGCACAAAATTGACAGCTGGGAGGGGCTTCTCTGTGAAGCGGCTTCCTGTTTTGGCGCTCGCCAGCCAGTCTGGTAGTGGCCTGTATATTTGTACACATGCAGCACATATATCCGAACGGTACAAAGatttttttcgttttctttttatgaaaTAGAGCTTTCTGGCGTTTAGTTGTCCATTGCACCACACTAGTTTTTGCTTGCTAAAATGGATGCATGTCCCTGACTATGCCCTTGGTGTtcaatttcagtatttttctaaCAATCATGCGCATTCCCTTAGCCTTCAGTGGACTTACTCGCTGACGTTGCTGTCGCACTCTTTTTCGCCATGTAACAACAATGTCCCTAAGCCTCAAGTTTTCTGACAATGGACCAACCCTGCTAACATGCAAATCTGTTGAATTCCCACTAGGACTACTGTGGCTGTTTATAGCTGCATTTAACACGTGGCCATATCATCTTAAATACATTCCACTGTTTTATTCCACTGCAATATATgctgtttttaagaaatatataatatattgtaaagaCTTTGGTCAAATTACTTGCGTGATTGTTTTCTCTACCCCATATAATTTCAATCTTGTctgaatgaaatgaatacaCCATTAGTTTTTATTAGAATGGTCCGTACACTGTGGTCTGACTTGCTCAGGAACTGAACTTGGATGTTGGCATAAATGACTCAAATGAAAACACTATTGCAATTAGAAA

Function

symbol description
atp2a2b Predicted to enable P-type calcium transporter activity. Acts upstream of or within determination of heart left/right asymmetry. Predicted to be located in membrane and sarcoplasmic reticulum. Predicted to be active in sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in axis; myotome; pectoral fin; and pectoral fin musculature. Human ortholog(s) of this gene implicated in acrokeratosis verruciformis; essential hypertension; keratosis follicularis; and pulmonary hypertension. Orthologous to human ATP2A2 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2).
atp2a2 Enables several functions, including P-type calcium transporter activity involved in regulation of cardiac muscle cell membrane potential; S100 protein binding activity; and protein C-terminus binding activity. Involved in several processes, including calcium ion transport from cytosol to endoplasmic reticulum; macroautophagy; and mitochondrion-endoplasmic reticulum membrane tethering. Located in endoplasmic reticulum membrane and longitudinal sarcoplasmic reticulum. Part of calcium ion-transporting ATPase complex. Colocalizes with intercalated disc. Implicated in acrokeratosis verruciformis; essential hypertension; keratosis follicularis; and pulmonary hypertension.

NR:

description
PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 2

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K05853 ATP2A; P-type Ca2+ transporter type 2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221006.1 True 5778 mRNA 0.48 20 3514033 3542738

Neighbor

gene id symbol gene type direction distance location
arpc3 arpc3,LOC107737855,LOC107707141 coding upstream 8446 3503222 ~ 3505587 (+)
gpn3 gpn3,LOC107686892,LOC107692302,LOC106563155 coding upstream 11291 3499645 ~ 3502742 (+)
LOC122326336 vps29,LOC107595689 coding upstream 16805 3493984 ~ 3497228 (+)
LOC122326141 aqp3b,LOC107686895,LOC107737882,LOC107692335,LOC107707134,LOC107556931,LOC107595728 coding upstream 33539 3475983 ~ 3480494 (+)
LOC122326952 NA coding upstream 175068 3336985 ~ 3338965 (+)
bcr bcr,LOC107595694,LOC107679847,LOC107556943,LOC105889081,LOC105014833,LOC106566295 coding downstream 1505 3544243 ~ 3602480 (+)
trnam-cau_115 NA coding downstream 72422 3615160 ~ 3615231 (+)
tsc1b tsc1,tsc1b,LOC107595695,LOC107556942 coding downstream 74301 3617039 ~ 3634175 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 coding downstream 194643 3737381 ~ 3748407 (+)
rxraa rxraa,rxra,LOC107708356,LOC107679846,LOC107556936,LOC107686886,LOC107573462 coding downstream 244021 3786759 ~ 3918707 (+)
G143590 NA non-coding upstream 21446 3488511 ~ 3492587 (+)
LOC122326852 NA non-coding upstream 177344 3336261 ~ 3336689 (+)
G143578 NA non-coding upstream 198560 3315177 ~ 3315473 (+)
G143509 NA non-coding upstream 576416 2930262 ~ 2937617 (+)
G143491 NA non-coding upstream 651016 2862772 ~ 2863017 (+)
G143638 NA non-coding downstream 66181 3608919 ~ 3610050 (+)
G143656 NA non-coding downstream 208861 3751599 ~ 3752198 (+)
LOC122326834 NA non-coding downstream 220594 3763332 ~ 3769556 (+)
G143664 NA non-coding downstream 260720 3803458 ~ 3803769 (+)
LOC122326258 NA non-coding downstream 376995 3919733 ~ 3921719 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other upstream 194020 3297990 ~ 3320013 (+)
gnrh2 LOC107595723 other upstream 683677 2829114 ~ 2830356 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 1276838 2233659 ~ 2237195 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other upstream 1457354 2030104 ~ 2056679 (+)
LOC122326311 NA other upstream 2284978 1227998 ~ 1229055 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 158691 3701429 ~ 3704397 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other downstream 564063 4106801 ~ 4213772 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other downstream 589698 4132436 ~ 4386212 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other downstream 969188 4511926 ~ 4524180 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other downstream 1162419 4705157 ~ 4709441 (+)

Expression


Co-expression Network