agxt2 (agxt2,LOC107662137,LOC107719064,LOC107739667,LOC102783298)


Basic Information

Item Value
gene id agxt2
gene name agxt2,LOC107662137,LOC107719064,LOC107739667,LOC102783298
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 901673 ~ 915039 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221057.1
CCATTGGCTGAATTTGCCCCTCCCCGAATGCTTTTTGGGGTAGAATTCAAAGCTTTCCACGCTTTAATTTTAGGATTTGccgcaaaacttttttttatctttaagaCATCAGCCATGCATAAAGTTTGTTCTCGGCTGCACGGTCCGTCTCTGTTCGGGAAAACGGACCAGCGGATTTTAGTGGAAGCGTGTGTGAAATTCCACAGAGGTTGCGGTGTGCTTTGCCAGAAATCAGCCGTGAAACACCCACCACCTGTGCTGCCCCAGATTCCCCCATGTGACTTTAAACCTGAGCCGTATCAGGGCATGTCTAAAGACAGGTTACTTGAGATAAGGAAAAATAACTGCAACCCCATGACCATGAAGGTAACGTACTACAAGAAGCCAGTCTTCATAAACCAGGGTTACATGCAGTGGTTGTGGGACGTGGACGGAAGACGCTATCTGGACTTGTTTGCGGGGGTCGCCACTATTAGCGTAGGACATTGTAACCCGAAAGTGACAGAGGTGGCTGAGAAACAGCTGAGGCGTCTATGGCACACGACAGCCATCTATGTCTATCCACAAATGCAGGAGTATGCTGAGAAACTGGCCTCTCTTTTGCCAGACCCATTGAAGgttgtcTATTTTACCAACAGTGGCTCGGAGGCTAACGACCTCGCAGTACTAATGGCCCGGCTTCACACAGGAAACTTTGATGTCATCACGCTGAGGGGTTCGTATCATGGTGGCAGTCCACAAGCGACTGGCCTGACGTCCAACGCAGATTACAAATATCCCGTCCCCTCTTCTATGGGCTGCCATAATACCATGTGTCCGGATGTGTTCAGGGGCCTCTGGGGAGGAAGCCACTGTAGAGACTCCCCAGTTCAAACCATCCGAGAATGCAGCTGCTCCCcagGTCACTGTCAGGCCAATGACATGTATATTAGTGAGCTCAAAGAGATGTTCGCCACAACCGTCCCCAATCGCATCGCCGCTTTCTTTGCAGAACCCATCCAGGGTGTTGGCGGGGCTGTTCAATACCCAAAAAACTACCTGAAAGACGCCTACCAGCTTGTTCGGGAAAAAGGAGGAATCTGTATCGCAGATGAGGTCCAAACTGGCTTTGGCCGCACAGGGAGCCACTTTTGGGGTTTCCAAGGACATAATGTCCTTCCAGACATGGTTACCATGGCAAAGGGCATAGCGAACGGCTTCCCAATGGGGGCTGTAGTCACCACAGCAGAGATTGCCAGGTCATTTGGGAAAGGAGTTCATTTCAACACATTTGGAGGAAACCCATTAGCCTGTGCAGTGGCCTCATCTGTGTTAGATACAATAAAAGAGGACAAGATGCAGGAGAACAGTGCTGAGGTGGGGACATATCTGCTGACTGAATTGGCCAAACTCAGGGACAAGTACGAGATCATCGGTGACGTGAGAGGAAAAGGTCTTCAAATCGGGGTGGAGATGGTCAAAGACAAGGCCAGCAGAGACCCGCTCGATCCTCAGGCCATGGCTGAGATCTTCGAGGACGCTAAAGACATGGGCGTACTGATTGGAAAAGGGGGACTGTATGGACAGactTTCAGGATCAAGCCTCCTATGTGCATAACTAAAGATGATGCAGACTTCTTCCTCGCTGTGTTCAACCAGGCAGTGCAAAACTACATGGAGAGAAGATAAGACACCCAGAACAAGATAAGACACACTGGCTCATATTTCATCTGGAGAATTATTCATTAGATAGCAGGTCTGGGCAGTTCATCTACAGACCACCAGGACCACACATTTTCACTCTCACATTCCTTAATATATGAGCGAGATGTCAAGCTTTCAGTCATTAATCAGAGTACACTATACTTCAGAAACCTAGAACCTACACAGTGTACTTATAAGCACTTGAGCTTGATCTGAGGCCTGACTGACCAGCTCTTTCAAGAACTGGGATTAGATTTACTCTCAAATAATTTAGGAGACTTATCGCTTTACTTAAAAGAAGTGttgtagaaaaacaaataatgctaATCAAGAATCAGTATCGTCTAACAATACAGCATGATTTGGTAATTGTCTTTACTgctgaaaataacaaatattgttTCTTGCGATGCTAAAAGCACACAGTTGtggctttttaaatgtatttaaacagcaGTTCTGCATTTTCAGTAAAAAGGCActttaatacataaatgtgttCGGAGAGGGATTAAATTCAAATCTGACCCACTTCAAATGACATTCATATATACGTCTATATGATTAAGCCAAGGtcacttttataataaattaatctgttgatgctttaaatgttaatgtgaagttagatatttttgttctgtaatAAAAGCaactgtatattaaataagCATGTGATGTTT

Function

symbol description
agxt2 Predicted to enable pyridoxal phosphate binding activity and transaminase activity. Is expressed in liver; notochord; pronephric duct; and pronephros. Orthologous to human AGXT2 (alanine--glyoxylate aminotransferase 2).

NR:

description
PREDICTED: alanine--glyoxylate aminotransferase 2, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008483 transaminase activity molecular_function

KEGG:

id description
K00827 AGXT2; alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221057.1 True 2366 mRNA 0.45 14 901673 915039

Neighbor

gene id symbol gene type direction distance location
prlra LOC107662152,LOC107739665,LOC107600937,LOC107665241,LOC107584552 coding upstream 323 878229 ~ 901350 (+)
oacyl LOC107600942,LOC107662202,LOC107739742,LOC107719080,LOC107584632 coding upstream 115141 779285 ~ 786532 (+)
znf532 LOC107662164,LOC107739659,LOC107600940,LOC107584556,LOC107701962,LOC107719066 coding upstream 122530 762646 ~ 779143 (+)
rx3 rax,rx3,LOC107739660,LOC107719081,LOC107584557 coding upstream 146021 752820 ~ 755652 (+)
cplx4a cplx4,cplx4a,LOC107662952,LOC107719084,LOC107739741,LOC107701934 coding upstream 151029 746242 ~ 750644 (+)
LOC122326806 LOC107719062 coding downstream 11319 926358 ~ 939559 (+)
arid6 LOC107739744,LOC107662105,LOC107600907,LOC107719083,LOC108436592 coding downstream 27814 942853 ~ 948284 (+)
gtf3c5 gtf3c5,LOC107600935,LOC107662094 coding downstream 70398 985437 ~ 990633 (+)
LOC122326353 cel.2,cell,LOC107662085,LOC107665230,LOC107584549,LOC107665247,LOC107754621 coding downstream 76952 991991 ~ 998077 (+)
LOC122326352 cel.2,cell,LOC107662085,LOC107665230,LOC107665247,LOC107584549,LOC107754621 coding downstream 84185 999224 ~ 1005090 (+)
G142832 NA non-coding upstream 89616 759275 ~ 812057 (+)
G142807 NA non-coding upstream 175081 726258 ~ 726592 (+)
G142729 LOC107749016,LOC107565393,LOC107701931,LOC107719087,LOC107584674,LOC107662962 non-coding upstream 467551 431624 ~ 434122 (+)
G142672 NA non-coding upstream 698498 202787 ~ 203175 (+)
G142658 NA non-coding upstream 705471 182416 ~ 196202 (+)
G142866 NA non-coding downstream 1582 916621 ~ 916963 (+)
LOC122326171 NA non-coding downstream 133339 1048378 ~ 1081301 (+)
G142941 NA non-coding downstream 157229 1072268 ~ 1074041 (+)
G142933 NA non-coding downstream 167128 1082167 ~ 1083273 (+)
G142954 NA non-coding downstream 175204 1090243 ~ 1102107 (+)
alpk2 LOC107600938,LOC107662700 other upstream 95567 735722 ~ 806106 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other downstream 135799 1050838 ~ 1055925 (+)
glrx glrx,LOC107661879,LOC107665229 other downstream 238065 1153104 ~ 1156142 (+)
LOC122326311 NA other downstream 312959 1227998 ~ 1229055 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other downstream 1115065 2030104 ~ 2056679 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 1318620 2233659 ~ 2237195 (+)

Expression


Co-expression Network