htr1ab (htr1ab,htr1a,LOC107589255,LOC107703504,LOC107681135,LOC107706510,LOC107708525,LOC107591737)


Basic Information

Item Value
gene id htr1ab
gene name htr1ab,htr1a,LOC107589255,LOC107703504,LOC107681135,LOC107706510,LOC107708525,LOC107591737
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5338356 ~ 5340138 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221146.1
GGGATTGCTCCGGTAGTGTGTCGCTAGAAATCAGACGAAGAGGATGTATGGATCTCTCTGGAAAAGATTCGGGAAAAACGCGCGAGCGCGTATTCTGAGCGGAGCCCACCCGGTACACCTGCGTAGGTAACTGACGTCTAGAGTCACTGCTGATATAAATGGAGCCGCGTCGTCACAAGTCGTCAGTAACAATGTTGATGGTTGGCATCGCCTTCAAGCGCGTGAGCTCCTCTGAATGGAGTAGTGCCGTTTAATGAGGTTTTGCTAATTTTACGCGCTACGCGCCATGGAAGAAAACAACGACACGTTCTTATCATTTCAGAACGACAGTGACTTAGATCAGCAAATCGACAACGTGACTTTACCTGCGACGGTTCCTCTAAGTTATCAGATCTCCACGTCTTTGCTGATCGGCGCGCTCATTCTATGTTCCATATTTGGAAACGCGTGCGTCGTGGCGGCTATCGCTTTGGAAAGATCCCTGCAAAATGTCGCAAACTACCTGATCGGATCACTTGCCGTGACGGACCTCATGGTGTCGGTGCTCGTGTTGCCAATGGCTGCCCTTTACCAAGTTTTAGACAAGTGGACGCTTGGACAGGTAACttgtgatatatttatttctttagacGTTTTGTGTTGCACATCTTCGATTCTGCACCTGTGCGCTATCGCTTTGGATAGATACTGGGCGATCACCGACCCGATAGACTACATGAAGAAAAGGACATTAAAACGTGCAGCTCTTTTAATTACCGTTACCTGGTTTGTCGGCTTTTCGATATCGATTCCGCCCATGTTGATCATGAAATCTCAACCCAAAAGTAAAGCGGAAGACATGGCCAATCCCGAAGCTTGCATGATCAGCCACGACCCATGGTACACTATTTATTCCACGTTTTGCGCGTTTTACATCCCTCTGATTCTCATGCTGGTCTTGTACGGACGCATATTTAAAGCGGCGAGATTTCGCATTCGCAAAACCGTTCGAAAGCCCGAGAAGAAGAGGGTGAAATGCTTGACTGTGTCACCTGCGCTTTTTAAGCGCGCGAACGGAGAGCTCGGCAAAAACTGGAAAAGCGCGGTCGAACCCAAGCCCGCCGCGTGCGTAAACGGCGCGGTGAAGCACGCGGAGGACGGCGAGTCTCTGGAGATCATCGAGGTTCACAGTAATTCCAAAAACAACTTGCCTCTGCCCAACACGCCGAACTCTGTCCCTCTGTTCGAGAACAAACACGAGAAGAACACCGAGGCGAAGAGGAAACTCGCCTTGGCGCGCGAGCGCAAGACAGTGAAGACTCTTGGCATTATAATGGGCACTTTTATTGTGTGTTGGCTGCCATTCTTCATCAAAGCAATCGTGCTGCCTTTTTGTCCGTCTTGTGATATGCCTTTGTGGCTCATCGACGTCATTAATTGGCTCGGGTATTCAAACTCGCTTTTGAACCCAATCATTTACGCGTACTTCAATAAAGACTTTCAGAGCGCCTTCAAGAAAATcattaaatgccatttttgcaGACCATAAACATACCGTCTTTTCAGTTTTAACTGTCAGATGCGCGAGTTTAACCAGTATTGATCGCTCAGAAAAACAATAGTGGTGTATTTCAACAGCACAGAGAACTTGCTCTTTAGTACCACTATAAATATACACGATTCATCCTGATTTTATATATCAGATGTATATGTTATGATAAAACGTGTGCTGAACGTGTTTCATGTCCATGACAAAGAAAGATCATGTCCATGATGTACAAATAAAAGCCCCACTGTACATTTA

Function

symbol description
htr1ab Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Acts upstream of or within spinal cord motor neuron differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Is expressed in brain; pharynx; retina; and spinal cord. Human ortholog(s) of this gene implicated in anxiety disorder; mental depression; and panic disorder. Orthologous to human HTR1A (5-hydroxytryptamine receptor 1A).
htr1a Enables G protein-coupled serotonin receptor activity and receptor-receptor interaction. Involved in adenylate cyclase-inhibiting serotonin receptor signaling pathway. Is integral component of plasma membrane. Implicated in anxiety disorder; mental depression; and panic disorder. Biomarker of Alzheimer's disease and mental depression.

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 1A-beta

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0046883 regulation of hormone secretion biological_process
GO:0008283 cell population proliferation biological_process
GO:0042310 vasoconstriction biological_process
GO:0050795 regulation of behavior biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG:

id description
K04163 HTR7; 5-hydroxytryptamine receptor 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221146.1 True 1783 mRNA 0.47 1 5338356 5340138

Neighbor

gene id symbol gene type direction distance location
c7b c7,c7b,LOC107681132,LOC107706508,LOC107703570 coding upstream 16259 5315013 ~ 5322097 (+)
LOC122326643 oxct1b,LOC107703571,LOC107591691,LOC107681133,LOC108439614,LOC107711896 coding upstream 23947 5308926 ~ 5314409 (+)
LOC122326646 gadd45gb.1,LOC107591738,LOC107589289,LOC107706448,LOC107708506,LOC107681111 coding upstream 47326 5289647 ~ 5291030 (+)
efna5a efna5a,LOC107706503,LOC107589251,LOC107681184,LOC107703575,LOC107708530,LOC106563326,LOC105015058 coding upstream 85443 5203464 ~ 5252913 (+)
zgc:103482 zgc:103482,LOC107708531,LOC107703577,LOC107706502,LOC107681060 coding upstream 196855 5139161 ~ 5141501 (+)
ndr1 ndr1,LOC107706449,LOC107681142,LOC107589292,LOC107708517,LOC107591687 coding downstream 21820 5361958 ~ 5365041 (+)
rictorb rictor,rictorb,LOC107681152,LOC107589259,LOC107703559 coding downstream 102973 5443111 ~ 5466387 (+)
lifrb NA coding downstream 126376 5466514 ~ 5474409 (+)
ccdc61 ccdc61,LOC107681161,LOC107706517,LOC107589261 coding downstream 135096 5475234 ~ 5481781 (+)
itpkca itpkca,LOC107706518,LOC107589262,LOC107681162,LOC107703557,LOC107591683,LOC107708494 coding downstream 142349 5482487 ~ 5489762 (+)
G144007 NA non-coding upstream 9951 5327230 ~ 5328405 (+)
G143937 NA non-coding upstream 186467 5151557 ~ 5151889 (+)
LOC122326722 NA non-coding upstream 224072 5111482 ~ 5114284 (+)
G143926 slc26a1,LOC107589247,LOC107706495,LOC107681097 non-coding upstream 232130 5103857 ~ 5106226 (+)
LOC122326250 NA non-coding upstream 262753 5070327 ~ 5075603 (+)
G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding downstream 26054 5366192 ~ 5374922 (+)
G144081 LOC107708509 non-coding downstream 198062 5538200 ~ 5539464 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding downstream 291903 5632041 ~ 5632851 (+)
G144129 NA non-coding downstream 344690 5684828 ~ 5685097 (+)
G144130 NA non-coding downstream 365402 5705540 ~ 5706835 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 310310 4947584 ~ 5028046 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other upstream 426540 4899490 ~ 4911816 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other upstream 593090 4730603 ~ 4745266 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other upstream 628915 4705157 ~ 4709441 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 814176 4511926 ~ 4524180 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 160965 5501103 ~ 5506433 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other downstream 161895 5502033 ~ 5517936 (+)
sdhaf1 sdhaf1 other downstream 166408 5506546 ~ 5508393 (+)
G144077 NA other downstream 168527 5508665 ~ 5510746 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other downstream 392302 5732440 ~ 5735137 (+)

Expression


Co-expression Network