gpn3 (gpn3,LOC107686892,LOC107692302,LOC106563155)


Basic Information

Item Value
gene id gpn3
gene name gpn3,LOC107686892,LOC107692302,LOC106563155
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3499645 ~ 3502742 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221148.1
TTCCGTAGGCGACGGAAAACAGCATGGCTACTGTATGTATTATACGCATAACGCATTCCTGAGGCAAATAACTcgttttgtgttaaaaaaagaagggaaaacGGCGTACCATCTAGTGTTGCTGGAGCAGGAGAGTTAAAAATGCCTCGATTCGCGCAGCTAGTGATGGGTCCGGCCGGAAGTGGAAAGagtaCTTACTGTGCCACAATGTTAGAGCATTGCCAGGCCCTCAACCGATCAGTACAGGTGGTGAATCTGGATCCAGCTGCAGAGCATTTTGAGTATCCTGTCATGGCAGACATTCGAGAATTAATCCAGGTAGATGACGTTATGGAGGATGACTCTCTGAGATTCGGCCCCAATGGAGGACTCATCTTCTGTATGGAGTACTTCGCCAACACCGACTGGCTGGAGGAGAGTCTTGGTCACGTGGAGGATGACTACATACTGTTTGATTGCCCTGGTCAGATCGAGCTGTACACGCATCTGCCCGTGATGAAGCAGCTTGTGGAGCAGCTGCAGCAGTGGGAGTTTCGTGTGTGTGGAGTCTTCCTGGTTGACTCACAGTTCATGGTCGAGACCTTCAAGttcaTCTCTGGAGTTATGGCTGCTTTGAGTGCTATGGTGACATTAGAAATCCCACAAGTCAACATAATGACCAAAATGGATCTGCTCAGTCCAAAGTCTAAGAAGGAAATAGAGAAgtATCTAGACCCAGATATGTACTCAATGATGGAGGACAACTCCGTATCTTTGAGAAGCAAGAAATTCAGGAAATTAACAAAGGCCATATGTGGTTTGATTGATGATTACAGTATGGTTCGTTTCCTGCCCTTTGACCGCACTGATGAGGAGGGCATCAACATTGTCCTGCAACACATTGATTTCTCCATACAATACGGTGAAGACCTGGAGTTTAAAGAGCCCAAGGAAGTTGATGGGGGACCCAGTAATACAAATTTTGATGAGTTCTTCCAAGACAGAGATGATTCTTGAGTGAGGACAGACATCATACTTCAAAGACAGACATATTTGTTCCACTAATTAAGAGCTTAATTTATTGAAGCTATATTTTGTGTCACTGTCATTCATAATGCAGTTAGCTGAAGGATGCAACCACAACCCGAGCAATGCCTCAATCTTAGCAgagttttataaaatacaatccATTTTTTTAGTAgcgcatatttatttttgcaataaaaatatggaAATGACAAA

Function

symbol description
gpn3 Predicted to enable GTPase activity. Orthologous to human GPN3 (GPN-loop GTPase 3).

NR:

description
PREDICTED: GPN-loop GTPase 3-like

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG:

id description
K24104 GPN; GPN-loop GTPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221148.1 True 1221 mRNA 0.44 9 3499645 3502742

Neighbor

gene id symbol gene type direction distance location
LOC122326336 vps29,LOC107595689 coding upstream 2417 3493984 ~ 3497228 (+)
LOC122326141 aqp3b,LOC107686895,LOC107737882,LOC107692335,LOC107707134,LOC107556931,LOC107595728 coding upstream 19151 3475983 ~ 3480494 (+)
LOC122326952 NA coding upstream 160680 3336985 ~ 3338965 (+)
LOC122326784 ube2g1b,ub2g1,LOC107686891,LOC107595690,LOC106579958,LOC103152401,LOC106931442 coding upstream 169840 3326500 ~ 3329805 (+)
LOC122326816 NA coding upstream 205637 3291697 ~ 3294008 (+)
arpc3 arpc3,LOC107737855,LOC107707141 coding downstream 480 3503222 ~ 3505587 (+)
atp2a2b atp2a2b,atp2a2,LOC107708347,LOC107556944,LOC108444117 coding downstream 11291 3514033 ~ 3542738 (+)
bcr bcr,LOC107595694,LOC107679847,LOC107556943,LOC105889081,LOC105014833,LOC106566295 coding downstream 41501 3544243 ~ 3602480 (+)
trnam-cau_115 NA coding downstream 112418 3615160 ~ 3615231 (+)
tsc1b tsc1,tsc1b,LOC107595695,LOC107556942 coding downstream 114297 3617039 ~ 3634175 (+)
G143590 NA non-coding upstream 7058 3488511 ~ 3492587 (+)
LOC122326852 NA non-coding upstream 162956 3336261 ~ 3336689 (+)
G143578 NA non-coding upstream 184172 3315177 ~ 3315473 (+)
G143509 NA non-coding upstream 562028 2930262 ~ 2937617 (+)
G143491 NA non-coding upstream 636628 2862772 ~ 2863017 (+)
G143638 NA non-coding downstream 106177 3608919 ~ 3610050 (+)
G143656 NA non-coding downstream 248857 3751599 ~ 3752198 (+)
LOC122326834 NA non-coding downstream 260590 3763332 ~ 3769556 (+)
G143664 NA non-coding downstream 300716 3803458 ~ 3803769 (+)
LOC122326258 NA non-coding downstream 416991 3919733 ~ 3921719 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other upstream 179632 3297990 ~ 3320013 (+)
gnrh2 LOC107595723 other upstream 669289 2829114 ~ 2830356 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 1262450 2233659 ~ 2237195 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other upstream 1442966 2030104 ~ 2056679 (+)
LOC122326311 NA other upstream 2270590 1227998 ~ 1229055 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 198687 3701429 ~ 3704397 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other downstream 604059 4106801 ~ 4213772 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other downstream 629694 4132436 ~ 4386212 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other downstream 1009184 4511926 ~ 4524180 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other downstream 1202415 4705157 ~ 4709441 (+)

Expression


Co-expression Network