Gene
RNA
| Item | Value |
|---|---|
| gene id | G12877 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 202998 ~ 203217 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU14315 | True | 220 | lncRNA | 0.49 | 1 | 202998 | 203217 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_00192545_00195828 | FAM46A.L, FAM46AB, FAM46A, FAM46AA | coding | downstream | 6167 | 191931 ~ 196831 (-) |
| CI01000001_00124107_00131285 | ELOVL4B | coding | downstream | 71618 | 122814 ~ 131380 (-) |
| CI01000001_00113458_00118362 | NA | coding | downstream | 84551 | 111929 ~ 118447 (-) |
| CI01000001_00105105_00108304 | NA | coding | downstream | 93154 | 104255 ~ 109844 (-) |
| CI01000001_00001500_00064341 | CDH24 | coding | downstream | 137422 | 708 ~ 65576 (-) |
| CI01000001_00218182_00220017 | NA | coding | upstream | 14440 | 217657 ~ 220116 (-) |
| CI01000001_00222940_00227735 | NA | coding | upstream | 19583 | 222800 ~ 228007 (-) |
| CI01000001_00238241_00249437 | NA | coding | upstream | 35024 | 238241 ~ 249437 (-) |
| CI01000001_00305883_00333574 | FYCO1A | coding | upstream | 102274 | 305491 ~ 333798 (-) |
| CI01000001_00362143_00378213 | NA | coding | upstream | 158397 | 361614 ~ 378213 (-) |
| G12868 | NA | non-coding | downstream | 17941 | 184856 ~ 185057 (-) |
| G12866 | NA | non-coding | downstream | 23963 | 178775 ~ 179035 (-) |
| G12859 | NA | non-coding | downstream | 36838 | 164953 ~ 166160 (-) |
| G12856 | NA | non-coding | downstream | 48718 | 153967 ~ 154280 (-) |
| G12878 | NA | non-coding | upstream | 275 | 203492 ~ 203706 (-) |
| G12880 | NA | non-coding | upstream | 5932 | 209149 ~ 209358 (-) |
| G12873 | NA | non-coding | upstream | 8092 | 211309 ~ 212246 (-) |
| G12920 | NA | non-coding | upstream | 74827 | 278044 ~ 278289 (-) |
| G12921 | NA | non-coding | upstream | 79338 | 282555 ~ 282782 (-) |
| G14104 | NA | other | upstream | 1560452 | 1763669 ~ 1771468 (-) |
| G14219 | NA | other | upstream | 1790993 | 1994210 ~ 1994898 (-) |
| G14228 | NA | other | upstream | 1852757 | 2055974 ~ 2056478 (-) |
