LOC122326336 (vps29,LOC107595689)


Basic Information

Item Value
gene id LOC122326336
gene name vps29,LOC107595689
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3493984 ~ 3497228 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221149.1
CCTAGCGTGATCTGGCAACATCTAGTTTCTGGCCTTACGAGTCAACATCAGCTTCCTGAGCTCCGTTTCAAACACGCAGCTGGGCAAAAATGGCTGGTCACAGACTGGTCCTTGTGTTAGGTGACCTTCACATTCCCCACCGATGCAACACCCTGCCTGCCAAATTCAAGAAGTTGCTAGTGCCTGGCAAAATTCAGCACATCCTCTGCACCGGAAACCTTTGCACAAAGGAGAGCTACGACTACCTGAAAACACTGGCTGGAGATGTGCACATCGTCAGAGGAGACTTCGACGAGAACTTGAATTATCCAGAGCAGAAGGTGGTAACAGTGGGGCAGTTCAAAATCGGCCTCATCCACGGACACCAAGTGATCCCGTGGGGTGACATGGCAAGCTTGGCACTGCTTCAGAGGCAGCTGGATGTGGATATCCTCATTTCTGGTCACACGCATAAATTTGAGGCTTTTGAGAATGagaataaattttatattaaccCTGGATCTGCCACAGGGGCCTACAGTGCACTGGAAAGCAACATCACACCATCGTTTGTTTTGATGGACATTCAAGCGTCTACCGTGGTAACGTATGTCTATCAGCTCATTGGAGACGACGTCAAAGTCGAGAGAATCGAATACAAAAAGTCTTAAAGAGCGCGGATGCTGTCGGCTGCCTTCTTTCAGGATTCTAATCTTGTCATTCCCTCTCACCTGAACGTCACAAATGCTGTATCATAACATTACgctatattttaatgtaatatataatactgttTATATGTCACCGGAATGTCAGCATTGTGGTTTTGGCAGATGGTTGTTGAGGATGCAATAATGCTGCATTATTTGCATAATGTTAGTGCGAATTAGTCTTCTACATATGTTATGTGCCCCATTAATTTTTCAAGGCCCATGTCAAGTCatctttcataaaataaaacccCACATCACATAA
>XM_043221150.1
GTTTATTTTCCTAGCGTGATCTGGCAACATCTAGTTTCTGGCCTTACGAGTCAACATCAGCTTCCTGAGCTCCGTTTCAAACACGCAGCTGGGCAAAAATGCTGGTCCTTGTGTTAGGTGACCTTCACATTCCCCACCGATGCAACACCCTGCCTGCCAAATTCAAGAAGTTGCTAGTGCCTGGCAAAATTCAGCACATCCTCTGCACCGGAAACCTTTGCACAAAGGAGAGCTACGACTACCTGAAAACACTGGCTGGAGATGTGCACATCGTCAGAGGAGACTTCGACGAGAACTTGAATTATCCAGAGCAGAAGGTGGTAACAGTGGGGCAGTTCAAAATCGGCCTCATCCACGGACACCAAGTGATCCCGTGGGGTGACATGGCAAGCTTGGCACTGCTTCAGAGGCAGCTGGATGTGGATATCCTCATTTCTGGTCACACGCATAAATTTGAGGCTTTTGAGAATGagaataaattttatattaaccCTGGATCTGCCACAGGGGCCTACAGTGCACTGGAAAGCAACATCACACCATCGTTTGTTTTGATGGACATTCAAGCGTCTACCGTGGTAACGTATGTCTATCAGCTCATTGGAGACGACGTCAAAGTCGAGAGAATCGAATACAAAAAGTCTTAAAGAGCGCGGATGCTGTCGGCTGCCTTCTTTCAGGATTCTAATCTTGTCATTCCCTCTCACCTGAACGTCACAAATGCTGTATCATAACATTACgctatattttaatgtaatatataatactgttTATATGTCACCGGAATGTCAGCATTGTGGTTTTGGCAGATGGTTGTTGAGGATGCAATAATGCTGCATTATTTGCATAATGTTAGTGCGAATTAGTCTTCTACATATGTTATGTGCCCCATTAATTTTTCAAGGCCCATGTCAAGTCatctttcataaaataaaacccCACATCACATAA

Function

symbol description
vps29 Predicted to enable metal ion binding activity. Predicted to be involved in endocytic recycling; intracellular protein transport; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in endosome membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS29 (VPS29 retromer complex component).

NR:

description
vacuolar protein sorting-associated protein 29 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0015031 protein transport biological_process
GO:0016311 dephosphorylation biological_process
GO:0010008 endosome membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004647 phosphoserine phosphatase activity molecular_function

KEGG:

id description
K18467 VPS29; vacuolar protein sorting-associated protein 29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221149.1 True 954 mRNA 0.45 5 3493993 3497228
XM_043221150.1 False 951 mRNA 0.44 4 3493984 3497228

Neighbor

gene id symbol gene type direction distance location
LOC122326141 aqp3b,LOC107686895,LOC107737882,LOC107692335,LOC107707134,LOC107556931,LOC107595728 coding upstream 13490 3475983 ~ 3480494 (+)
LOC122326952 NA coding upstream 155019 3336985 ~ 3338965 (+)
LOC122326784 ube2g1b,ub2g1,LOC107686891,LOC107595690,LOC106579958,LOC103152401,LOC106931442 coding upstream 164179 3326500 ~ 3329805 (+)
LOC122326816 NA coding upstream 199976 3291697 ~ 3294008 (+)
LOC122326343 LOC107692324,LOC107595714,LOC107737877,LOC107686912,LOC107736923,LOC107563914 coding upstream 517933 2966166 ~ 2976051 (+)
gpn3 gpn3,LOC107686892,LOC107692302,LOC106563155 coding downstream 2417 3499645 ~ 3502742 (+)
arpc3 arpc3,LOC107737855,LOC107707141 coding downstream 5994 3503222 ~ 3505587 (+)
atp2a2b atp2a2b,atp2a2,LOC107708347,LOC107556944,LOC108444117 coding downstream 16805 3514033 ~ 3542738 (+)
bcr bcr,LOC107595694,LOC107679847,LOC107556943,LOC105889081,LOC105014833,LOC106566295 coding downstream 47015 3544243 ~ 3602480 (+)
trnam-cau_115 NA coding downstream 117932 3615160 ~ 3615231 (+)
G143590 NA non-coding upstream 1397 3488511 ~ 3492587 (+)
LOC122326852 NA non-coding upstream 157295 3336261 ~ 3336689 (+)
G143578 NA non-coding upstream 178511 3315177 ~ 3315473 (+)
G143509 NA non-coding upstream 556367 2930262 ~ 2937617 (+)
G143491 NA non-coding upstream 630967 2862772 ~ 2863017 (+)
G143638 NA non-coding downstream 111691 3608919 ~ 3610050 (+)
G143656 NA non-coding downstream 254371 3751599 ~ 3752198 (+)
LOC122326834 NA non-coding downstream 266104 3763332 ~ 3769556 (+)
G143664 NA non-coding downstream 306230 3803458 ~ 3803769 (+)
LOC122326258 NA non-coding downstream 422505 3919733 ~ 3921719 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other upstream 173971 3297990 ~ 3320013 (+)
gnrh2 LOC107595723 other upstream 663628 2829114 ~ 2830356 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 1256789 2233659 ~ 2237195 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other upstream 1437305 2030104 ~ 2056679 (+)
LOC122326311 NA other upstream 2264929 1227998 ~ 1229055 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 204201 3701429 ~ 3704397 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other downstream 609573 4106801 ~ 4213772 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other downstream 635208 4132436 ~ 4386212 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other downstream 1014698 4511926 ~ 4524180 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other downstream 1207929 4705157 ~ 4709441 (+)

Expression


Co-expression Network