arpc3 (arpc3,LOC107737855,LOC107707141)


Basic Information

Item Value
gene id arpc3
gene name arpc3,LOC107737855,LOC107707141
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3503222 ~ 3505587 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221151.1
GCGCCTCCCAGTGGTTGTGTCCGGAAGTTGTCCTGGAAACTTCCTGTATCGGTGTTGGGTGGGACAGCGGAAGCGGCGGCTCGCAGCGCTGACATATTCATTTTTGCCTGCCAGATTTGGGACGTATTGTACCAAGATGCCGGCTTACCACTCGAGCCTGATGGATGCGGACACCAAAATGGTGGGAAACATGGCATTGCTGCCCCTCAAAACACAGTTTAAGGGTCCTGCTGCgaaagaaaCCAAAGACACCGATATTATTGATGAGGCCATCTACTACTTCAAAGCCAATGTTTTCTTCAAGAACTATGAAATTAAGAACGAGGCTGATCGAACTTTGATCTACACCACACTTTACATCTCCGAATGCCTCAAGAAGCTCCAGAAGtgCAGTTCGAGGGGTCAAGGAGAGAAGGAGATGTACACGCTGGGAATTACCAACTTTCCCATCCCAGGAGAACCTGGCTTTCCTCTGAATGCCATGTACGCTAAACCCTCGAACAAACAGGAGGAAGAAACGATGAGGGCTTACCTGCAACAAATCAGACAGGAGACAGGACTGAGATTGTGTGACCGTGTGTTCGACCCTCAGACAGACAAACCAAGCAAGTGGTGGGTGTGTTTTGTGAAGAAACAGTTCATGAACAAAAGTCTGTCTGCACCTGGCCAGTAAGAAACCACTCAGGATCTCTGGTTCTGCGTGGGACGTGGATggggttttttcttttattttctgtctttttttttctttaatgtgtatgtgagtgtgtttacTCTAAGATTTTTTTACTGGTGATATCAAGTATATTTGACTTCTGGCCTGTCATTCGAAGCAGAAgccaatcaaataaaaatctattaaagaGAAACAAGACAACGGCA

Function

symbol description
arpc3 Predicted to enable actin binding activity. Predicted to contribute to actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC3 (actin related protein 2/3 complex subunit 3).

NR:

description
actin-related protein 2/3 complex subunit 3

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG:

id description
K05756 ARPC3; actin related protein 2/3 complex, subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221151.1 True 882 mRNA 0.46 7 3503222 3505587

Neighbor

gene id symbol gene type direction distance location
gpn3 gpn3,LOC107686892,LOC107692302,LOC106563155 coding upstream 480 3499645 ~ 3502742 (+)
LOC122326336 vps29,LOC107595689 coding upstream 5994 3493984 ~ 3497228 (+)
LOC122326141 aqp3b,LOC107686895,LOC107737882,LOC107692335,LOC107707134,LOC107556931,LOC107595728 coding upstream 22728 3475983 ~ 3480494 (+)
LOC122326952 NA coding upstream 164257 3336985 ~ 3338965 (+)
LOC122326784 ube2g1b,ub2g1,LOC107686891,LOC107595690,LOC106579958,LOC103152401,LOC106931442 coding upstream 173417 3326500 ~ 3329805 (+)
atp2a2b atp2a2b,atp2a2,LOC107708347,LOC107556944,LOC108444117 coding downstream 8446 3514033 ~ 3542738 (+)
bcr bcr,LOC107595694,LOC107679847,LOC107556943,LOC105889081,LOC105014833,LOC106566295 coding downstream 38656 3544243 ~ 3602480 (+)
trnam-cau_115 NA coding downstream 109573 3615160 ~ 3615231 (+)
tsc1b tsc1,tsc1b,LOC107595695,LOC107556942 coding downstream 111452 3617039 ~ 3634175 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 coding downstream 231794 3737381 ~ 3748407 (+)
G143590 NA non-coding upstream 10635 3488511 ~ 3492587 (+)
LOC122326852 NA non-coding upstream 166533 3336261 ~ 3336689 (+)
G143578 NA non-coding upstream 187749 3315177 ~ 3315473 (+)
G143509 NA non-coding upstream 565605 2930262 ~ 2937617 (+)
G143491 NA non-coding upstream 640205 2862772 ~ 2863017 (+)
G143638 NA non-coding downstream 103332 3608919 ~ 3610050 (+)
G143656 NA non-coding downstream 246012 3751599 ~ 3752198 (+)
LOC122326834 NA non-coding downstream 257745 3763332 ~ 3769556 (+)
G143664 NA non-coding downstream 297871 3803458 ~ 3803769 (+)
LOC122326258 NA non-coding downstream 414146 3919733 ~ 3921719 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other upstream 183209 3297990 ~ 3320013 (+)
gnrh2 LOC107595723 other upstream 672866 2829114 ~ 2830356 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 1266027 2233659 ~ 2237195 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other upstream 1446543 2030104 ~ 2056679 (+)
LOC122326311 NA other upstream 2274167 1227998 ~ 1229055 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 195842 3701429 ~ 3704397 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other downstream 601214 4106801 ~ 4213772 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other downstream 626849 4132436 ~ 4386212 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other downstream 1006339 4511926 ~ 4524180 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other downstream 1199570 4705157 ~ 4709441 (+)

Expression


Co-expression Network