gtf3c5 (gtf3c5,LOC107600935,LOC107662094)


Basic Information

Item Value
gene id gtf3c5
gene name gtf3c5,LOC107600935,LOC107662094
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 985437 ~ 990633 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221177.1
CTTCTCCTGAGCTGCAATTCCACCCGGATGATTTTCACAAGCGGACACCTTCTTGTACATGCTGTTTACCAAGGCACTCTGTCAAAGAAATACGCAAttcaaaagatgtttttttcctcatgcatAGGCGTAGAACAACAGTCGTTTTAAAATGGACCCGGTGATTACAAGCAATCCGGCTTCGTCAAGCACAGATGTGGGAGAAAGCCAGGATACAGCTGTTGTGTCAGGCAATACAGCAACACTGGCCCTGCCTGACACTAGTTTAGTGTGTGTTGAATACCCGGCCGTCGTCAACAATGTGGACACAATGCTAAAAAGCATTGGAGGCGAAGAGGGAGTGTCAAAGACCTATGCAGATTCTTCTAAAAGACTTGAACTGCGTTTTCGGCCGAAGGATCCTTTCTGCCATCCTGCTTATGGGAACCGCTACTCCTCCACCAACCTGCTGCTCAGAGTGCGCCGCAGAACACGCAAAGGAAACAGTGCAGAAACCCAAATCAGCATGGAGATAGTGGGACTTATTGGGACCACATATAAATTTCAAGGAATGGCTGACTTCCAGTACCTAGCGACTCACGTCGATCCAGATGGAAACCAGGCTTCTTTGTACGACAAAATAATTTTGCGCAAGCCCGAAAAGAAGGAATTCTACGACAATCCCGTGCCTCTTTTCATCCCTCCTCCTATTTTCTCTCGTCTGGACACGGCTGTGGATTATTATTATCGTCCAGATGTACTGCACAGCAGGGAGACCGCAATGCAGTCCGTTCTCCTTAAAGATCATCTTATTGCTCCCAATCGAGCTCGCCGTCCAAACAATGCCATTTTTATCAACTTTGATGACAAGACCATACCATCAGAACCTCTAGAAGCTGCAGTGGCCAGCTGGAAGAAGGTCTGTCTCCATGCTAATGATGCAAAGGCAGAGCAGCAACTCAGACAGCTTTTCGAGAAAAGGCCCATATGGTCTCGCAATGCAGTCAAGGCCAACATTAACATTCACCCTGAGAAAATGAAGCACCTCCTCCCGTATATGGCGTACTACATGtTAACAGGGCCGTGGAGGAGTTTGTGGGTCAGGTTTGGATACGATCCTCGAAAAACTGCAGAAGCAAAAATCTACCAGGTTCTAGACTTCAGGATCCGCTATGGAATGAAACACGGATTTGGTGTCAATGACATGCCAGTGAAGCCCAAAAGAAGTGCTTATCATTACAGCCACCCAACCAGTATCAACAGGGCAGTTCCTCAACCTGCTTGTGTGACTGACATCACTCAGGAAAGTGCTTCCTCTTCAGGACCCAAACCCGCCACTGCCAAGTACTTACTAAAGGACTCTGTCTACGTCTTCAGAGAGGGAATGCTTCCTCCATACCGCCAGATGTTTTACCAGCTGTGTGATCTGGATGTAGAAAAaataaagaATATCATCCATAAGAATGATGGGAAAGAGGAAGTGTGTGATGAGAGGGATGGCTGGTGTGTGCCTCATACAGCCGACGAGCTCAGGAATATCATCTCTGGAATGATCCAACACCAGGTCCGAGCCAACCGGCCAGCTTCATTCACAAAAAAGCCTGTAAGAACTAAATCCAAAACTGTTAACAATGaagtggaggaggaggatgaagatgatgaagaagatgatgatgatgaagagtaCAAGCCCTCTGATGGGAGCGACAATGAAATGGAAACTGAGATTGCAGATTATTTGTAACTCGCCGTTAGTTTTGTCTGTGGCACTTATAAAGGATTCGctgtgttaatgttaatgtaaaa

Function

symbol description
gtf3c5 Predicted to enable DNA binding activity. Predicted to act upstream of or within transcription initiation from RNA polymerase III promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIIC complex. Orthologous to human GTF3C5 (general transcription factor IIIC subunit 5).

NR:

description
PREDICTED: general transcription factor 3C polypeptide 5

GO: NA

KEGG:

id description
K15202 GTF3C5, TFC1; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221177.1 True 1785 mRNA 0.46 11 985437 990633

Neighbor

gene id symbol gene type direction distance location
arid6 LOC107739744,LOC107662105,LOC107600907,LOC107719083,LOC108436592 coding upstream 37153 942853 ~ 948284 (+)
LOC122326806 LOC107719062 coding upstream 45878 926358 ~ 939559 (+)
agxt2 agxt2,LOC107662137,LOC107719064,LOC107739667,LOC102783298 coding upstream 70398 901673 ~ 915039 (+)
prlra LOC107662152,LOC107739665,LOC107600937,LOC107665241,LOC107584552 coding upstream 84087 878229 ~ 901350 (+)
oacyl LOC107600942,LOC107662202,LOC107739742,LOC107719080,LOC107584632 coding upstream 198905 779285 ~ 786532 (+)
LOC122326353 cel.2,cell,LOC107662085,LOC107665230,LOC107584549,LOC107665247,LOC107754621 coding downstream 1358 991991 ~ 998077 (+)
LOC122326352 cel.2,cell,LOC107662085,LOC107665230,LOC107665247,LOC107584549,LOC107754621 coding downstream 8591 999224 ~ 1005090 (+)
zgc:92275 zgc:92275,LOC107662064,LOC107754619,LOC107665231,LOC107739715,LOC105902521,LOC105024189,LOC106565467 coding downstream 15162 1005795 ~ 1015300 (+)
grin1a grin1a,LOC107662014,LOC107754622,LOC108435476,LOC108278500,LOC107600932 coding downstream 32991 1023624 ~ 1048011 (+)
zmat1 krcc1,LOC107600930,LOC107662001,LOC107739673,LOC107584622 coding downstream 65698 1056331 ~ 1063140 (+)
G142866 NA non-coding upstream 68474 916621 ~ 916963 (+)
G142832 NA non-coding upstream 173380 759275 ~ 812057 (+)
G142807 NA non-coding upstream 258845 726258 ~ 726592 (+)
G142729 LOC107749016,LOC107565393,LOC107701931,LOC107719087,LOC107584674,LOC107662962 non-coding upstream 551315 431624 ~ 434122 (+)
G142672 NA non-coding upstream 782262 202787 ~ 203175 (+)
LOC122326171 NA non-coding downstream 57745 1048378 ~ 1081301 (+)
G142941 NA non-coding downstream 81635 1072268 ~ 1074041 (+)
G142933 NA non-coding downstream 91534 1082167 ~ 1083273 (+)
G142954 NA non-coding downstream 99610 1090243 ~ 1102107 (+)
G142963 NA non-coding downstream 114852 1105485 ~ 1105817 (+)
alpk2 LOC107600938,LOC107662700 other upstream 179331 735722 ~ 806106 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other downstream 60205 1050838 ~ 1055925 (+)
glrx glrx,LOC107661879,LOC107665229 other downstream 162471 1153104 ~ 1156142 (+)
LOC122326311 NA other downstream 237365 1227998 ~ 1229055 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other downstream 1039471 2030104 ~ 2056679 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 1243026 2233659 ~ 2237195 (+)

Expression


Co-expression Network