zgc:92275 (zgc:92275,LOC107662064,LOC107754619,LOC107665231,LOC107739715,LOC105902521,LOC105024189,LOC106565467)


Basic Information

Item Value
gene id zgc:92275
gene name zgc:92275,LOC107662064,LOC107754619,LOC107665231,LOC107739715,LOC105902521,LOC105024189,LOC106565467
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1005795 ~ 1015300 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221222.1
CGGACATATGCTGTGACCCCTAGAATAAAGCATAGCGCGCGTAAACAAACACTGCCGCTTTACTCTCTGCATAGAAACCAAAATGAGAAGGAGGGCTTACCGAGAGCACTGACTGACTGTCATAGTGTACGTGACATCGCAGGTGTCATGGAGAATTCGCGGGTATCACTGATGTTCAAGGCGGTCGCGGTGGCAGCGATCGGTCTCACCGCCACGTTAGTCATGCTCGTTCAAGATCCATCAGACACGCTGCTCGGAGGGGGATACCCCGAACTGTGGCGGAAAACCGGACTAGCGGGAGCCCCTACGCGGGCGGCAGCTTGCATATTTACGGGCGTACTGCTCCTAGCGATGGGCTGGTTGTACAGACTGTTATTCGCTCCTCTGGAGCTGCTCCGCGGCGTGGATGAGGTGGGGTACATCGCGGAGGACGGGCGCTCTCGTGCCCAGGCGGCCAACGAAGTGCGGCGGCGACGGAAGACCGGAGAATTACCGCCGGTTTATCCAAACGGCTGGTACCGGGTTTTAGACTCTCACATGCTGGAGAGAGGAGACGTGAAGAGTGTGACGGTTCTGGgACAGCAGGTGGCAGTGTTTCGTGGGCAAGATGGCAAGGCCTATGTGGTGGATGCTTACTGCCCGCACTTAGGCGCCAACCTGGCTGTGGGTGGGCGAGTCGTAGGGGGATGCATCGAATGCCCCTTCCACGGGTGGCAGTTCCGCggggctgatgggaaatgtgTCAAGATTCCATATGCAGATAAAGTGCCTGAGTTTGCGAAGGTGCGGTGCTGGCCCAGCTGTGAGATCAACGGGCAGGTTCTGGTGTGGTTTCACTGTGACGGGCTGGAGCCCAGCTGGAGAGTGCCAGAACAGAGCGAGATCACCCGCGGGGAATGGGTGTACCGCGGCCGGACCGAACATTTCATTAATGCACACATTGAGGAGATTCCAGAGAACGCAGCAGATATCGCACACTTGGCTCATTTGCACACTCCAGGTATCGTCAGTGGAGTTGATCTGCGCTATACTAACAGCAAGACCTGGGAGTTTATACGGCACGACTGGAAGGTAGAGTGGAAGCCTGAGCCTGAGCCAAACAAGCACTGTTCACAGATGTTGGTGAAACACGCTCTCACTGTGTTCGGACGCCACTGGCCTCTTCTTGATTTGGACGTCCTGGCCAGACAGgTGGGTCCAGGTGTGGTTTTCCTGCTTTTTGAACACAGTTTTTTGGGTCGGGGTGTGATTATGCACTGCGTTACCCCAGTCGAGCCATTATTGCAGTGTGTATCACACACCATCTTCTACCAGAGCAGCATCCCTCCCTTGGTACCAAAATTCATCCTTCGAGCAGAATGCATTCAGTTCGAACGAGATGTGATGATCTGGAACAACAAGACGTACATCTCCAAACCCATGCTTGTGAAAGAAGACTCAGCCATTCAGAAACACCGGCGCTGGTTCAGTCAGTTCTACAGCGAGAACAGCCCACGACTGCGCTACCAGCACGACACTCTGGACTTCTGAACACCGACTATGCTTCAGCCCGTATGGGGTTGCTTAAAGGCcgatatcaatatttttttaaccgaAGCTGATATTTtgttgccatttttaaaaaaaataattatgcaaaaatgctaattatgcaaaaaataaacaatgcatttctTGAGCA

Function

symbol description
zgc:92275 Predicted to enable oxidoreductase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm.

NR:

description
cholesterol 7-desaturase-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
K14938 NVD, DAF36; cholesterol 7-desaturase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221222.1 True 1681 mRNA 0.53 7 1005795 1015300

Neighbor

gene id symbol gene type direction distance location
LOC122326352 cel.2,cell,LOC107662085,LOC107665230,LOC107665247,LOC107584549,LOC107754621 coding upstream 705 999224 ~ 1005090 (+)
LOC122326353 cel.2,cell,LOC107662085,LOC107665230,LOC107584549,LOC107665247,LOC107754621 coding upstream 7718 991991 ~ 998077 (+)
gtf3c5 gtf3c5,LOC107600935,LOC107662094 coding upstream 15162 985437 ~ 990633 (+)
arid6 LOC107739744,LOC107662105,LOC107600907,LOC107719083,LOC108436592 coding upstream 57511 942853 ~ 948284 (+)
LOC122326806 LOC107719062 coding upstream 66236 926358 ~ 939559 (+)
grin1a grin1a,LOC107662014,LOC107754622,LOC108435476,LOC108278500,LOC107600932 coding downstream 8324 1023624 ~ 1048011 (+)
zmat1 krcc1,LOC107600930,LOC107662001,LOC107739673,LOC107584622 coding downstream 41031 1056331 ~ 1063140 (+)
cd8b LOC107754642,LOC107665224,LOC107600931,LOC107739674,LOC107662663 coding downstream 49542 1064842 ~ 1068363 (+)
cd8a NA coding downstream 58949 1074249 ~ 1077136 (+)
pcsk1 LOC107739678,LOC107661910,LOC107600928,LOC107665244 coding downstream 101291 1116591 ~ 1131625 (+)
G142866 NA non-coding upstream 88832 916621 ~ 916963 (+)
G142832 NA non-coding upstream 193738 759275 ~ 812057 (+)
G142807 NA non-coding upstream 279203 726258 ~ 726592 (+)
G142729 LOC107749016,LOC107565393,LOC107701931,LOC107719087,LOC107584674,LOC107662962 non-coding upstream 571673 431624 ~ 434122 (+)
G142672 NA non-coding upstream 802620 202787 ~ 203175 (+)
LOC122326171 NA non-coding downstream 33078 1048378 ~ 1081301 (+)
G142941 NA non-coding downstream 56968 1072268 ~ 1074041 (+)
G142933 NA non-coding downstream 66867 1082167 ~ 1083273 (+)
G142954 NA non-coding downstream 74943 1090243 ~ 1102107 (+)
G142963 NA non-coding downstream 90185 1105485 ~ 1105817 (+)
alpk2 LOC107600938,LOC107662700 other upstream 199689 735722 ~ 806106 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other downstream 35538 1050838 ~ 1055925 (+)
glrx glrx,LOC107661879,LOC107665229 other downstream 137804 1153104 ~ 1156142 (+)
LOC122326311 NA other downstream 212698 1227998 ~ 1229055 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other downstream 1014804 2030104 ~ 2056679 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 1218359 2233659 ~ 2237195 (+)

Expression


Co-expression Network