ccdc61 (ccdc61,LOC107681161,LOC107706517,LOC107589261)


Basic Information

Item Value
gene id ccdc61
gene name ccdc61,LOC107681161,LOC107706517,LOC107589261
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5475234 ~ 5481781 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221316.1
TGAGCCGCTGTTTTCAGTTGTTCGAGCTCAGTAACGAGTTTACCGAACATGCTTTCGATAAATTAATAgagatttgcatttgttttctatttttttaaaaaaacccatttcaTCGACGTTTTAAATGTAGAGTTTTAATCGAACAGCTCGTGCCTGCCTAACACATTTCCACCAATAACGGGCTGCCAGTGGCAAGCGATGGAGGTTGGCACAGTTGTGCAAGAAGAAATGAAATTTCGGGGGGCTGAATTCGCTGTCAAGGTCGAGCTGGTGGAGCGGCTACTAATCGTAGAGATTTCAGATGTTGTTACAGCAGACCAGTGGAGAGGAGAGTTTGATCCTGCCTatATTGAAGACCTGACCCGGAAAACTGGGAATTTTAAACAGTTTCCAGTATTCTGCAGCATGCTTGAGTCTGCTGTCAACAAGTCCAGTGAATCAGTGACCCTTGACCTCTTGACCTATTCCGACCTCGAGCTTCTGCGGAACAGAAAGGCAGGTGTCGTTGGCCGACCTCGTGCTCAGCCACAGTCTCCTGCCCTCAGCGCTAAACGATACCTCATCCTCATCTACACTGTGGAGTTTGACAGgatACATTATCCACTTCCACTTCCATATCTGGGCAAACCTGATCCTGCAGAGCTTCAAAAAGAGATCAGAGCTCTGAGGGGCGAGCTGAAAACACTGGGGCTGAGAGGAGACTACAAAGTGTCTGACCAAGAAACACGCAAGCTCCGTGCAGAGTTGGCTTTGGCGAGAGATGAAAAGGAAGCCTTAGCCAAGGCTCTGGATCATCTACAGATGGTGGGGCCTGGTTCCGCTCCTGGGTCTCGTGGGCTTAGAGAGGCAGTGCGCAGCCTGGAAGAACAGCTGTTGAAGGAAAGGGCAAAAAGCCAGCGCTCTGCAAGCAAGAGGAGCCAAGAACAGCGCCTCCTTCTGGAACAGTTGGAGGAACTCAAAGCATCAGAACGGGCTTTACGGATACGTGTTAAAAGTCTGACCACTGAGCTGGCCTTGTTGCGACGCGGTCGAGCGACTCCAGTCATGTCTGGCCGAAGTAGTCTCAGAGGTGATGGAGAAGTTCATCGGTCTTTATCCAGAGAGCGCAGTCTGACCCGTGTGGGGGTAAGAGCGCGCTCGGGGTCGAGGGAGAGGATGGAGGACAGGACTCGGAGATCAGAGGAGAGAATTAGGAGGGCAGACTCTTCAGGGTCTCGAAATTGCATCACAAGACCCTCGCCATCTCCAACAGGGTCGCGGGTGCCTCGGTTTGACCCTACGGCCTACATTCAAGATCGACAACGTCGCCAAAAAGAGGCCGAGATAAAGAATCAGAGGAAGATTAGAAGGGACATGTTGGCTTCACCGTCTCTGATGGAAAGAGGCCGTTCACGCTCCAGGGAGCCTGTTCCTCAGCTGATGAGAGCAGGAAGCGCTGGCAGGGGGAGGAGTGTGTCTGTGGAGAGCAGGAGGAGTCGGTGCTCTTCAGAAGGATCAGTAGCTGAGTTTGAGGAGCTTGCTAAGCCTCTAAATAGCAGaGGAAGGAAACTGGCATACAATGGTCCAGCTGTGGCCAGAGGACGCCACATAAACAAAAAGCCAATGTGTAGCACCCCAGCCCAGAGGATGAGAGGGGCAGACACATCTATTGAGACGGGTGCTGACCTGTCAGAGATTGACGCTCGACTCCAGGCCCTGCAGGACTACATGCGGGATCTTGACACTGGACGTTAATCTCGGTGGATTCAACTGTTGATCTAGGCTTTTTGCACAAAGACTGAAAACTTGGAcaatcatttcttttaaacactGTGTACAGATGTGTCTGTATCGTAGTCATTCATACTAATGAGACTTTGTTTCCTTTACCCCAAATGTAACTTTTGGGCTTGACTCAAAATGCAGTTACAGTGGTTTTGTGAAGGGGGTTCTTGAGACCGTTGCCATATCAGACTTGAAGTAAACCAGAAGTGTCCCAAAGTATGACCTCAGGATATACCATTTTTAACACATTcctgtgtacatttttattaattagtgtttgtttggccattgttattttgttttggggtttttttaatatgtgttaGTGTCTGTTTTATGTCCATTTTAGATGCTCTCATATTTTGTTGTCGtgagaaactgaaaaacaaagctttttttctatatacatacataaaaggATTTTGCAGTACA
>XM_043221317.1
TGAGCCGCTGTTTTCAGTTGTTCGAGCTCAGTAACGAGTTTACCGAACATGCTTTCGATAAATTAATAgagatttgcatttgttttctatttttttaaaaaaacccatttcaTCGACGTTTTAAATGTAGAGTTTTAATCGAACAGCTCGTGCCTGCCTAACACATTTCCACCAATAACGGGTATGTTGCTAGCGTGCTAGTTGTGTTTGGTCTGAGATTCATCTATCGTAACAGTAACTTACCCACATTTATCATCACCATCTGTAATCTCATCTTCGTCTGTAGCACTCAAAACCATAACGCTGCCAGTGGCAAGCGATGGAGGTTGGCACAGTTGTGCAAGAAGAAATGAAATTTCGGGGGGCTGAATTCGCTGTCAAGGTCGAGCTGGTGGAGCGGCTACTAATCGTAGAGATTTCAGATGTTGTTACAGCAGACCAGTGGAGAGGAGAGTTTGATCCTGCCTatATTGAAGACCTGACCCGGAAAACTGGGAATTTTAAACAGTTTCCAGTATTCTGCAGCATGCTTGAGTCTGCTGTCAACAAGTCCAGTGAATCAGTGACCCTTGACCTCTTGACCTATTCCGACCTCGAGCTTCTGCGGAACAGAAAGGCAGGTGTCGTTGGCCGACCTCGTGCTCAGCCACAGTCTCCTGCCCTCAGCGCTAAACGATACCTCATCCTCATCTACACTGTGGAGTTTGACAGgatACATTATCCACTTCCACTTCCATATCTGGGCAAACCTGATCCTGCAGAGCTTCAAAAAGAGATCAGAGCTCTGAGGGGCGAGCTGAAAACACTGGGGCTGAGAGGAGACTACAAAGTGTCTGACCAAGAAACACGCAAGCTCCGTGCAGAGTTGGCTTTGGCGAGAGATGAAAAGGAAGCCTTAGCCAAGGCTCTGGATCATCTACAGATGGTGGGGCCTGGTTCCGCTCCTGGGTCTCGTGGGCTTAGAGAGGCAGTGCGCAGCCTGGAAGAACAGCTGTTGAAGGAAAGGGCAAAAAGCCAGCGCTCTGCAAGCAAGAGGAGCCAAGAACAGCGCCTCCTTCTGGAACAGTTGGAGGAACTCAAAGCATCAGAACGGGCTTTACGGATACGTGTTAAAAGTCTGACCACTGAGCTGGCCTTGTTGCGACGCGGTCGAGCGACTCCAGTCATGTCTGGCCGAAGTAGTCTCAGAGGTGATGGAGAAGTTCATCGGTCTTTATCCAGAGAGCGCAGTCTGACCCGTGTGGGGGTAAGAGCGCGCTCGGGGTCGAGGGAGAGGATGGAGGACAGGACTCGGAGATCAGAGGAGAGAATTAGGAGGGCAGACTCTTCAGGGTCTCGAAATTGCATCACAAGACCCTCGCCATCTCCAACAGGGTCGCGGGTGCCTCGGTTTGACCCTACGGCCTACATTCAAGATCGACAACGTCGCCAAAAAGAGGCCGAGATAAAGAATCAGAGGAAGATTAGAAGGGACATGTTGGCTTCACCGTCTCTGATGGAAAGAGGCCGTTCACGCTCCAGGGAGCCTGTTCCTCAGCTGATGAGAGCAGGAAGCGCTGGCAGGGGGAGGAGTGTGTCTGTGGAGAGCAGGAGGAGTCGGTGCTCTTCAGAAGGATCAGTAGCTGAGTTTGAGGAGCTTGCTAAGCCTCTAAATAGCAGaGGAAGGAAACTGGCATACAATGGTCCAGCTGTGGCCAGAGGACGCCACATAAACAAAAAGCCAATGTGTAGCACCCCAGCCCAGAGGATGAGAGGGGCAGACACATCTATTGAGACGGGTGCTGACCTGTCAGAGATTGACGCTCGACTCCAGGCCCTGCAGGACTACATGCGGGATCTTGACACTGGACGTTAATCTCGGTGGATTCAACTGTTGATCTAGGCTTTTTGCACAAAGACTGAAAACTTGGAcaatcatttcttttaaacactGTGTACAGATGTGTCTGTATCGTAGTCATTCATACTAATGAGACTTTGTTTCCTTTACCCCAAATGTAACTTTTGGGCTTGACTCAAAATGCAGTTACAGTGGTTTTGTGAAGGGGGTTCTTGAGACCGTTGCCATATCAGACTTGAAGTAAACCAGAAGTGTCCCAAAGTATGACCTCAGGATATACCATTTTTAACACATTcctgtgtacatttttattaattagtgtttgtttggccattgttattttgttttggggtttttttaatatgtgttaGTGTCTGTTTTATGTCCATTTTAGATGCTCTCATATTTTGTTGTCGtgagaaactgaaaaacaaagctttttttctatatacatacataaaaggATTTTGCAGTACA

Function

symbol description
ccdc61 Predicted to enable identical protein binding activity. Predicted to be involved in centriole assembly and mitotic spindle assembly. Predicted to act upstream of or within cell projection organization. Predicted to be located in centriolar satellite and ciliary basal body. Predicted to be part of centriolar subdistal appendage. Predicted to be active in centrosome. Orthologous to human CCDC61 (coiled-coil domain containing 61).

NR:

description
PREDICTED: coiled-coil domain-containing protein 61 isoform X2

GO: NA

KEGG:

id description
K16755 CCDC61; coiled-coil domain-containing protein 61

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221316.1 False 2196 mRNA 0.48 13 5475234 5481781
XM_043221317.1 True 2317 mRNA 0.48 13 5475234 5481781

Neighbor

gene id symbol gene type direction distance location
lifrb NA coding upstream 825 5466514 ~ 5474409 (+)
rictorb rictor,rictorb,LOC107681152,LOC107589259,LOC107703559 coding upstream 8847 5443111 ~ 5466387 (+)
ndr1 ndr1,LOC107706449,LOC107681142,LOC107589292,LOC107708517,LOC107591687 coding upstream 110193 5361958 ~ 5365041 (+)
htr1ab htr1ab,htr1a,LOC107589255,LOC107703504,LOC107681135,LOC107706510,LOC107708525,LOC107591737 coding upstream 135096 5338356 ~ 5340138 (+)
c7b c7,c7b,LOC107681132,LOC107706508,LOC107703570 coding upstream 153137 5315013 ~ 5322097 (+)
itpkca itpkca,LOC107706518,LOC107589262,LOC107681162,LOC107703557,LOC107591683,LOC107708494 coding downstream 706 5482487 ~ 5489762 (+)
LOC122326433 LOC107589295,LOC107681110,LOC107706452,LOC107703460,LOC107591721 coding downstream 8097 5489878 ~ 5499593 (+)
rtn2b rtn2,rtn2b,LOC107706456,LOC107703556,LOC107708513 coding downstream 42799 5524580 ~ 5530203 (+)
b9d2 b9d2,LOC107589303,LOC107706523,LOC107681120,LOC107573061,LOC107703500 coding downstream 142102 5623883 ~ 5626040 (+)
tgfb1b LOC107681095,LOC107706521,LOC107589304,LOC107703499,LOC107754964,LOC107573058 coding downstream 145227 5627008 ~ 5631309 (+)
G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding upstream 100312 5366192 ~ 5374922 (+)
G144007 NA non-coding upstream 146829 5327230 ~ 5328405 (+)
G143937 NA non-coding upstream 323345 5151557 ~ 5151889 (+)
LOC122326722 NA non-coding upstream 360950 5111482 ~ 5114284 (+)
G143926 slc26a1,LOC107589247,LOC107706495,LOC107681097 non-coding upstream 369008 5103857 ~ 5106226 (+)
G144081 LOC107708509 non-coding downstream 56419 5538200 ~ 5539464 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding downstream 150260 5632041 ~ 5632851 (+)
G144129 NA non-coding downstream 203047 5684828 ~ 5685097 (+)
G144130 NA non-coding downstream 223759 5705540 ~ 5706835 (+)
LOC122326140 NA non-coding downstream 311083 5792864 ~ 5794604 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 447188 4947584 ~ 5028046 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other upstream 563418 4899490 ~ 4911816 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other upstream 729968 4730603 ~ 4745266 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other upstream 765793 4705157 ~ 4709441 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 951054 4511926 ~ 4524180 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 19322 5501103 ~ 5506433 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other downstream 20252 5502033 ~ 5517936 (+)
sdhaf1 sdhaf1 other downstream 24765 5506546 ~ 5508393 (+)
G144077 NA other downstream 26884 5508665 ~ 5510746 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other downstream 250659 5732440 ~ 5735137 (+)

Expression


Co-expression Network