crkl (crkl,LOC107706473,LOC107589229,LOC107700778,LOC107591716,LOC107722822,LOC107703602)


Basic Information

Item Value
gene id crkl
gene name crkl,LOC107706473,LOC107589229,LOC107700778,LOC107591716,LOC107722822,LOC107703602
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4538262 ~ 4544632 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221386.1
CGTGACGGGTGATCAGACAGACCGGGAGCGCGCGCAGATCCGCCCTCCAGACGCCATTTCTCGGACGGTGTGGGGAGCTGAAGCAGCTTTTACACCAATCCTGGGAAGGAACGgcaaacacaacaaacagaaATTTTAGTCCTCTCGGTCGTCTCGTGGCGTGGCGGCGTCGTGCCTCGTATAGGGGAGCGCCGCGCAAGGAGGGAAACTTTCTCTTGCCAGATTGTTCTCAGTTCGTTGTGTGTGAAGACGTGTTGCGGGCCGCCATTTTTGTTACAGCCCTCGAAGTCTGTTGGGAGTCTAAATAAGAGACAAAAACTCTTCCGCACTTTGGTGTAATACACGAAGAAGGACTCGCTGTTGGACGCGACCGACATACGTCGCCTTAAAACATGCAGAGcgatttattaacatattatggCGTTGTTTGCCTCATCTTGAGCGGACGGTGATTGAGGACGGCTAGCTGGCTAACGCGTTATATTGTCTCATAAGCTGCAGCTACTTTCACGGAAGAGAGAGCGGAAAGGGGAACTTTAATTCTAAATACGCGTTTTTGGGTTCGTCGCGAACTTTTGGGGTTCTTTAAACCTGTTCTAAGCCCGCCGTGATTCTCGTGTTGGTGGAAATTTAGCGATGCATCAAAGTTGGTTGACGCCAGTCGCAGCCTGTCTGGTCAAACGTCAGGTTGCGGTTCAGTAGGGCTGTCGGATCAAGACGCGTGTGGTCTTTTGCAAGAATAGGCGTTTGtcgttttaatttattcattgtttccatttttgctttttcGAATTCGCCTGCCACCGTTGTATTTTGAGCAAACATGTCGTCTGCGCGGTTCGACTCCTCGGACCGAACCAGCTGGTATTTCGGGCCGGTTTCGAGACAGGAGGCGCAGAATAGGCTACAGGGACAGAGACACGGGATGTTTTTGGTGCGAGATTCCTCCACCTGCCCTGGTGATTATGTACTGTCAGTGTCCGAAAACTCCAAAGTTTCTCACTATATCATCAACTCTTTGCCGAACAAGAGATTCAAGATAGGCGACCAAGAGTTTGATAATCTACCTGGCCTTTTGGAGttctataaaatacattatctGGATACGACCACCCTGATAGAGCCAGCACCGAGGTACCCCAGTACCTCTCTGCCCAGTGGTCCGATTCAGCCATCCGGGGGCCTAGGAGATGAGAACCAGGAGTATGTCCGGACTCTTTATGACTTCACTGGTAGCGATGCTGAAGACCTTCCTTTCAAGAAGGGCGAAATCCTAATTATTCTAGACAAGCCTGAGGAGCAATGGTGGAGTGCCAAGAACAAAGAAGGCCGAGTAGGCATGATTCCCGTTCCCTATGTAGAAAAGTTGGTGAGGCCTTCACCTCATCCCGGTCAGCCCGGCCACGGTTCACGTAATTCCAATAGCTACGGCATCCCTGAACCAGCACACGCCTATGCTCAGCCTCAGACTCCATCGCCCATTCCTCCCATCACACCCGGCGCTGTCATCAACCCACTGCCTTCCATGCAGAACGGGCCAGTAATGGCAAAGGCGATCCAGAAACGAGTGCCATGTGCATATGACAAGACTGCCTTAGCGCTGGAGGTGGGGGACATTGTGAAAGTGACTAGGATGAACATCAGCGGTCAGTGGGAAGGGGAGGTAAATGGCCGGAGAGGTTTATTCCCTTTCACCCATGTGAAAATATTGGACCCCCAAAACCCAGATGAGAGCGAATGATCTGGGCCGTGTGCTGTCAGCACCCCTTCAGCTCGCCGGCCGCCCCATCAAGTCACCACCGGTATTACGCTTGCCTGCCTTGGGGCTCCGCCGTGGCGCATTTCTCAAGCAAACCATTTGCGTGGCTTCTGACTGTTTACAGCTCCCGAAATCAAACGGTTCTTAATCCCCCCTCACCTGGTTACAGGcgaatcagtattttttttttgtttgtgtgcgcgTCTGCccttaatattgttttgtttccacACATCGGCCAGCTGTACCTGTGACAAGGTGAATTGAGGCCTCCAACATAACCCGAGCCTTCTTGCCACTCTCCTGcagttttctgtcttttagCTTTGACTTTTGCCAGCTAAACTATGTTGTGTTAAGAAAGGGAAATTAGGTTCATTATATCCGTTTTGATTGAAAACTGTTCACCCAAATCCGATCTTTTATATAGTCGTTCGTTACATTTAAACAGAATCCAAGTGATACTGATCTGACTTTTGGTAACAGCCATGACTTGAAGATTTTCAGTGGCAGGTTCTTAGAGTAGCAACAACCGCACCACTCCTCCTGATTGACTCACcatttagtctttttattttctctgctAGTATGTGGGACTAGTCTACTGTAGCCTTTTTATTTGTGCCATAATAAATTATCTGTAAATTGCAGTAGTAGTGTAGCTAGATGGTTGTGGCTAGACTCTCGGGGGATCTTTTGAATGGTGAAGGGCTTGCCTGTGGAGCTTTTACATTCGATTGTGATGCCTTAGATGCGAGATCGGCTCTGGGGAGAGTGAAACGCACATCAACTATTCCATTGGACAAGCTGGAAATGTCACCTGTGCAATCATGAGCTCATCTCTCGAGGACTGGATTCAGTGTATTGATTGTCCTACTCAGTAAAGGTGGCAGTAAAACGTTTGGATCTTGCTCCATTTCATGAGCGTTACCGCACATCACAAGGTCTCTAGTTTTTGCCCAGTATGATTCAGTAACCTGATATAAACATGACACTTAGGTTTTGTCCATCTGTAATCAGTTTCTTTTATTAGCCAGGTGTTACTGTGTGTTGAAATAAACTGGCGTTTTCTAAAAAGGGATTTTAAAAGCCTGCTGGTGGCCTCTGCATGACCTTCTGGCCAAGAgagatttctctctctttggTTAAATGCTGCTTCATGTCAtgtcttttatttctgtctgttgatttctttctttattttttcagtttgaaattTAATTCACCTTTGTCTGGTTTACATCCCTAGCATCAAGTTAAGGCTAAACATCCATATTAAGCAATAGACCAACCCGTATCTTTTTAGAAATGCTCAAATAATTTAAGTTTCAAAtacatgaactttttttttgttttgtttttttcctaagGCTTTAACAGTATTACTGTTTATCGTTTCACATTACAAAATATCCATGTGGTCTCATTcgttgaaaatgaaaatttgtgccttttattttcttacatCATTTACatgtgttaataatatttcccaTGGTTAACACCCGTGCTGGTATTACCCATTATGTACAGAACGagtaaataaaatttatgtCTACTTCTC

Function

symbol description
crkl Predicted to enable receptor tyrosine kinase binding activity and signaling adaptor activity. Acts upstream of or within myoblast fusion and pronephros morphogenesis. Is expressed in pronephros. Human ortholog(s) of this gene implicated in chronic myeloid leukemia. Orthologous to human CRKL (CRK like proto-oncogene, adaptor protein).

NR:

description
PREDICTED: crk-like protein

GO:

id name namespace
GO:0007520 myoblast fusion biological_process

KEGG:

id description
K04438 CRK, CRKII; C-crk adapter molecule crk

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221386.1 True 3323 mRNA 0.46 3 4538262 4544632

Neighbor

gene id symbol gene type direction distance location
smpd4 smpd4,LOC107706469,LOC107700779,LOC107685262,LOC107722816 coding upstream 17433 4510370 ~ 4520829 (+)
LOC122326553 si:dkey-1d7.3,LOC107565380,LOC107566205,LOC107722807 coding upstream 178959 4338972 ~ 4359303 (+)
LOC122326555 LOC107565381,LOC107708362 coding upstream 206908 4287203 ~ 4331354 (+)
LOC122326554 LOC107708345,LOC107565383,LOC107661188,LOC107566207,LOC107722811,LOC107684913 coding upstream 251837 4283196 ~ 4286425 (+)
rimbp2a si:ch73-287m6.1,LOC107565381,LOC107708362 coding upstream 309770 4207661 ~ 4228492 (+)
nefla LOC107700775,LOC107706475,LOC107589231,LOC107703600,LOC107591713,LOC107722831 coding downstream 9726 4554358 ~ 4557626 (+)
rpl17 rpl17,LOC107722835,LOC107700774,LOC107703598 coding downstream 36002 4580634 ~ 4583302 (+)
LOC122327010 NA coding downstream 36419 4581051 ~ 4581126 (+)
LOC122327008 NA coding downstream 37286 4581918 ~ 4581990 (+)
LOC122327011 NA coding downstream 38467 4583099 ~ 4583157 (+)
G143717 NA non-coding upstream 451736 4075527 ~ 4086526 (+)
LOC122326258 NA non-coding upstream 616543 3919733 ~ 3921719 (+)
G143664 NA non-coding upstream 734493 3803458 ~ 3803769 (+)
LOC122326834 NA non-coding upstream 768706 3763332 ~ 3769556 (+)
G143656 NA non-coding upstream 786064 3751599 ~ 3752198 (+)
G143745 NA non-coding downstream 6789 4551421 ~ 4552468 (+)
LOC122326582 NA non-coding downstream 18702 4563334 ~ 4578128 (+)
G143751 NA non-coding downstream 44094 4588726 ~ 4589152 (+)
G143826 NA non-coding downstream 206585 4751217 ~ 4751510 (+)
G143827 NA non-coding downstream 207275 4751907 ~ 4752259 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 14082 4511926 ~ 4524180 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other upstream 152050 4132436 ~ 4386212 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other upstream 324490 4106801 ~ 4213772 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other upstream 833865 3701429 ~ 3704397 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other upstream 1218249 3297990 ~ 3320013 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other downstream 160525 4705157 ~ 4709441 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other downstream 185971 4730603 ~ 4745266 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other downstream 354858 4899490 ~ 4911816 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other downstream 402952 4947584 ~ 5028046 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 956471 5501103 ~ 5506433 (+)

Expression


Co-expression Network