helq (helq,LOC107681193,LOC107591711)


Basic Information

Item Value
gene id helq
gene name helq,LOC107681193,LOC107591711
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4692192 ~ 4698582 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221441.1
CTCGTCTTTTCGAAAGTCCTCGCTTCTGGTAAACATTAGCTAATGTGTCGCTCCTCACTGTTCAGAtgttattttgtgcaataatagatatttaattgttttgttatgGTTTTAATTTAGCGACCAAGGTCCGTTACTTAACTGTCGTACAGACATgactataaatgaataaacagtttCGCTTTGTGGTCGTTGTCCGTTAACCTACTGACCCTACAGTACGTCAGTATTATCACGTAATGCTGTAATATCAGTTTCCAGTAACTTTACACTAGGAATGTATACTGACAACCACATGCCCGAGATTGTGGTAAAGCGCAACACTTCGTCCTCAAAAAAGAGATCAAGGGATGGCATGAGAAGTCACATCACTCCAGCCAAGAAGCGGTCAAGTTTCACATCAGAAACATGCTCTACTGCCGAAGGACACAATCATACTAAAGACATGAGTGAGAATAAAGACACAGAGCTGTGCTGCAGTGACAACGAGGACTTGTTTGAGGGTTATGACAGCATTGTAGGTGACAGCTCGTTTCTGGCTAAGCTTGAAGATGTGGAGCTCCAGATGAGGCAGTGTCACGACCAGCAGACTCCAAATGCCTACGAGGATGATCTTTCAGACTCCGTCTTAGCTGAGGATTTCAGAGATTCACCACCTAGAGCTTTGCCGAGCTCTCAACTTGAATTTCAAAAAGCTGTCACATCTCCTCGCAAAAGCCCTTCCAGGGGTGCACATAACACCTCTACCCCCGATTTGATGAATCCCAGGCTAGCTGTCAATCATGCAGATCTCACTGTCAACAAGCCAGCCTCAAAGGCCAGAAGAAGCATGAAAGATCACCTTAAGAAAGTGCTGATAGACAATGCAGCAACATCCAGTGCTGTTTCCAAGACGGTACAACAAAAGGAGGCTGTGATGACTGAAGAAATAAGTTTTGCCGTGCAGGCGATGGAGTCCATATCAACTGAGCAGGACCTCGGCCCTTTTTTTGGTCTCCCATCCAAAGTTAAAGACCTTATTTTGAGATTAAAGAGAATCAAGGACTTGTATGAGTGGCAGAAGACGTGTTTGAGCCTGGATTCGGTGCACCAAAGGagaaatctaatttattctttACCAACAAGTGGAGGAAAGACTCTAGTGGCAGAAATTCTCATATTTAAAGAGCTCTTGTGTAGAAAGAAAGATGCACTTCTTATTTTGCCATACATATCTTTGGTTCAGGAAAAgGTTCGAGGGTTATCAAGCTTTGGAATCGAGTTAGACTTCATGGTCGAGGAATATGCTGGCAGTAAAGGGAGGTTTCCTCCGGTTaagagaagaaataaaaactcTCTGTACATCACAACTATTGAGAAGGGACACAGTCTTGTCAATTCATTGATTGAAAACAACCGTCTGGACAATATTGGTCTGGTTGTTGTAGACGAGctacaTATGGTTGGTGATGGAAGCAGGGCAATTCTTGAAATGACTTTGTCAAAGATCCTATACATGAGCAAATCCGCCCAAATTATTGGTATGAGTGCAACACTAGGCAACGTGGGAGATCTTCAGACCTTTCTGAAAGCTGAAAACTACACCAACAACTTCAGACCTGTTGAGCTAAAAGagtatgtaaaaataaaggaCAGCATATATGAAGTCGACCCAAGGGAAGAGACATGCTTCAGATTCTCACGACTTCTGGATTTTAAGTACTCCAGTGGAATGCAGAAAATGGACCCTGACCACATCATAGCTCTGGCTACTGAAGTCATCCCTCAGCAGTCCTGCCTAATTTTCTGTGCCACCAAGAAGAACTGCGAGAATCTAGCTGGAATGATCTGCAAGTATTTAAATAAggagTTTGTGAAACACAGGGAGGTAGAGAAAGCCACTCTTCTCGGTGAGCTAAAGAGCAGTGGGAATGGATCATTGTGTCCTGTGCTGCAGAAGACCGTGCCCTTTGGCCTGGCCTACCACCACAGCGGCCTGACCAGTGATGAGAGGAAGCTGGTAGAAGACGCCTATTCCTCGGGGGTGCTCTGCCTCCTCACCTGCACCTCTACTCTCGCTGCTGGCATCAACCTTCCAGCACGCAGGGTTATTTTGCGGTCACCATACGTAGCTACAGAGTTTTTAAAGAGAAGTCAGTACAAACAGATGGTAGGCAGAGCAGGACGAGCAGGTATTGATGCCATGGGTGAGAGCATCCTGATCCTGCAGGACAAAGatataaatatgGCCAAAAAACTGCTGTGTGCACCAATGGAGAAGTGTTACAGTAATATTCTTTATGATGGAAGGAGGGGCCTGCTCAGTCTTGTCCTGTCACTCATTGGGCTGAAGatAACTACAACTGTAGAACAAGTGAGGGATTTCATGAAAGGCACACTGCTTAGTGTGCAGGAGGCTCAGGTCAGTCCAGAGAGGAGTTTGTGGGACCTTACAGTGGAGTCTATAGAGACCCTGAAGGAGAAGAGCCTCATTGAAGTCTCTGTTGATGTAAATAATCAAACCATTCTACAAATCACCAGGCTTGGGAGAGCAACATTCAAAGGTTCAATAGACCTAAGCTACTGTGACCTGCTCTACCGAGACTTATCAAAAGGCCTGGAGGGTTTACTCCTCAATAGTTTTCTTCACTTAGTGTATCTGGTTACTCCATATGACATGGTGAATCAATGCAAACCAGATTGGATGATCTACTTCAGGCAGTTTACGAATTTGTCGACTGCTGAGCAGAAGATGGCCACTGCGGTCGGAGTGCCTGAAAGTTTTGTGGCTAGAAAGGCAGCGGGACAGAGCGTAAGGAAGTCTGTGGACATCGTGGTAGTGAATAGGTTATATCTGGCTCTGGTTCTGTACTCCCTACTGAAGGAGACAAACCTTTGGAACGTGTCCGATAGATTTCAGCTGACCAGAGGCTTCGTACAGACTCTTCTCAGCTCAGCTTCTGCCTTTGGCTCCTCCGTGCTGCACTTCACTGAGGAACTGGAGGAGTTTTGGGCCTACAAGGCTCTCCTCTCAGAGCTGACCCGTAGATTGACTTACTGTGTGCAGGCCGAGCTCATTCCACTAATGGAGGTTGCTGGAGTCATGGAGCATCGGGCTAAGCAGCTGTATAACGCTGGTTACAAAACACTGGCACATCTCGCCAGCGCAGATCCACAAATGCTGGTCCAAATTATTGAAAACCTTttcaaaaaacaagcaaatcaaATTATTGCATCGGCCAAAatgTTAATAAAAGAGAAAGCAGAGGCCTTGCAGGAGGAGGTGGACGAGTTGCTTATGCTGCCATCTGATATCCCATCATTGTAAAttccttttgtttatttttatgtatatgttgtAAATAGTACGGATATTATTTAATCTACCTTGCAATTATGTGAACTATTTTGTGCCTACACGTCtggctgaaaataaaaaaggatgtAACCTCA

Function

symbol description
helq Predicted to enable ATP binding activity and nucleic acid binding activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Orthologous to human HELQ (helicase, POLQ like).

NR:

description
helicase POLQ-like

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K19178 HELQ; POLQ-like helicase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221441.1 True 3432 mRNA 0.45 19 4692192 4698582

Neighbor

gene id symbol gene type direction distance location
abraxas1 fam175a,LOC107681177,LOC107589234,LOC107703595,LOC107591751,LOC107722832 coding upstream 1853 4686916 ~ 4690339 (+)
nkx6.1 nkx6-1,nkx6.1,LOC107706438,LOC107700773,LOC107722812,LOC107703597,LOC107591753 coding upstream 103734 4585890 ~ 4588458 (+)
rpl17 rpl17,LOC107722835,LOC107700774,LOC107703598 coding upstream 108890 4580634 ~ 4583302 (+)
hpse hpse coding downstream 144 4698726 ~ 4704776 (+)
amacr amacr coding downstream 22174 4720756 ~ 4729360 (+)
LOC122326163 LOC107681122,LOC107589283,LOC107706442 coding downstream 56044 4754626 ~ 4757400 (+)
rai14 rai14,LOC107681156,LOC107706485,LOC107589239,LOC107750373,LOC107703593,LOC107591710 coding downstream 62583 4761165 ~ 4793419 (+)
fgf10a fgf10a,LOC107706443,LOC107589284,LOC107750480,LOC107703510,LOC107591746,LOC107681114 coding downstream 112916 4811498 ~ 4826764 (+)
G143751 NA non-coding upstream 103040 4588726 ~ 4589152 (+)
LOC122326582 NA non-coding upstream 114064 4563334 ~ 4578128 (+)
G143745 NA non-coding upstream 139724 4551421 ~ 4552468 (+)
G143717 NA non-coding upstream 605666 4075527 ~ 4086526 (+)
LOC122326258 NA non-coding upstream 770473 3919733 ~ 3921719 (+)
G143826 NA non-coding downstream 52635 4751217 ~ 4751510 (+)
G143827 NA non-coding downstream 53325 4751907 ~ 4752259 (+)
G143872 NA non-coding downstream 101520 4800102 ~ 4862403 (+)
G143887 NA non-coding downstream 192556 4891138 ~ 4893087 (+)
LOC122326855 NA non-coding downstream 336348 5034930 ~ 5067800 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 168012 4511926 ~ 4524180 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other upstream 305980 4132436 ~ 4386212 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other upstream 478420 4106801 ~ 4213772 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other upstream 987795 3701429 ~ 3704397 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other upstream 1372179 3297990 ~ 3320013 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other downstream 6575 4705157 ~ 4709441 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other downstream 32021 4730603 ~ 4745266 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other downstream 200908 4899490 ~ 4911816 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other downstream 249002 4947584 ~ 5028046 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 802521 5501103 ~ 5506433 (+)

Expression


Co-expression Network