hpse (hpse)


Basic Information

Item Value
gene id hpse
gene name hpse
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4698726 ~ 4704776 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221442.1
CCAGCCAATCAAACGAGGCGTGCAGATAAATGAATCAGCCCGAAGCCACGCCCAGAAGTCGCTAGCGTGAGaggtatgtttttaaagaaaaaattgtcATGAACTGGTTTAACGAGAAAGAAGGAAGTAGTTTTGACGgtgccaaaaaaacaacaaacgaCATTTCGTCCGCATCTTTTTGACGAACGATGCCAGCAAAGCCCGAATAAGGACGACACCGGCGGACTGAACCGATGAAGTCTACGGCCACGGCGGTTTCCACAATAGTAGCTCTTGCTTTCTTTGGCGCATTGTACGTTGAGGCCAAAACAGTAATATCTGTTGATGATGCTCAGTCAATACGCGTCGATTTGGATCTGTCCCATGTCTCCCAACGGGTGGACGAAAGGTTTCTCTCGGTTGCCATAGATGCCAGTTTAATCGCAGAGGAGAAGTTCATGAACCTACTGAATTCACAGAAGTTAAGAACCCTTGCCAAAGCCTTGATCCCGGCTTTTCTGCGATTTGGAGGTACCAAACAAGATTTTATAAAATTCAGCCCACGCGGAAGATATTTTCAAGCGAGAGACAACAGCAGCAGCGCTGTTCTAGGGAAATTATGTGAGAGACTTGAATTGCCTCCGTTTCTGGAAAATAGGTTGAAGCAAGAATGGGTCCTACAGTCAAAGACTTTACGTCAGGAGGAACTAGAGggaaaatacaaaaagacaaaattttCTGAATATGCAGTCGATCTGCTATACGCTTTTGCAGACTGCTCTGGTTTGGACCTCATCTTCGGTTTGAATGCTTTGCTCCGAACCAGCAAAAACACATGGAACAGCACAAATGCAGAACTGCTGTTGAAGTACTGTGAGTCCAGGCAGTATGTGATGTCCTGGGAGCTGGGGAATGAACCCAACAGCTATGAGAAAAAGGCAGGGATCAGAGTGGATGGGTACCAGCTCGGTCAGGATTTTGTCCGCTTGCATCAAATCCTACGGGAATCGGCGCTCTACCACTCGACAGGACTATATGGACCGGATGTTAGTCAGCCACGAGATCACCGCAAAGATTTGTTAACTGGGTTTTTGGAGACTGGTGCAAAGGCCATTACTGCATGCACCTGGCATCACTATTATGTGAATGGCCGAGACACGTCTTTAGAGGATTTCCTTGACCCTGAAGTGCTTGATACTCTCGCAACGAAAATTAACGAGGTCCTCGAGATTGTTGAATCTGTCTCGGGGAAGAAGGTGTGGCTTGGAGAGACGAGCTCGGCATATGGTGGAGGGGCTGTGGGACTCTCTGACACATTTGTAGCTGGTTTCatGTGGCTGGACAAACTGGGGCTCGCTGCCAAGCTTGGTTTAGATGTCGTCATCAGACAGGTGTTAATTGGTTCTGGCACGTACCATTTAGTGGATGATAACCTGGATCCTCTTCCAGATTACTGGCTATCATTGTTATACAAAAGACTTGTTGGTCCAGAGGTCTTAAAAGCACAAGTTCTTACAAATTTCGGATCAAAGAAACCAATACGGGTTTACCTTCACTGCACTAACAGAAAAAGcacACATTATAGACCAGGCGCTGTGACCTTATTTGCCTTAAACctaaacaaaaatgaagttACGATTAGTCTGCCTGCGCGTACAACCAACAGCACAATTCAAGCATTTGTGCTACAATCAGCTGAGACTGGCGAACAGAGTCTTTATTCCAGGTCGGTCAAATTGAATGGACAAGTGCTAAAGATGGTGGACGACCAAACACTTCCTCCGCTGAAGGGACGTGATCTGCCGCCTGGAGAACGCATCAAGCTGCCCGGCTTCTCATTTGCATTCTACGTTCTGAGCGAAGCACAAGCCCCGGTATGCAAATGAGCTCTCGTAAAAGACAGCTTTCACTGGAGAATCAGGgatgatgacaaaatatttaGCTGTGACACTGTTTTATGTGAGGGAACTTCAAACTTGAACGAAATGATTCAGTCTGGTAATatataatcaacattttttatttacgaAAGTTCATATTTATTCTGGATTGAATCTGTTTTGCATCTTTTGAAATaaaccgattttttttttatcaaagtgcTCATTTGTCAGGACATCTTATTTGACAAGTTGAAGTGATCTATTATTTTCCATGCAGGCGTGAGGCCCTCTGCGCTTGCGGCAATCAAGCCTTTTGATTCTTAGCaattttctgtctgtgtgattcgcatctgtgtgtgtgtgtttagctaAATTTAGAGATGTATCATAAAAAGAACGAGACATTTAAGAATCCACTCAAATAGCAGGCATAAGACGTCTCGTTGCACTTGTTAGTCTATATTagagaaaaatgaaacatcTGGGATATCTTAAGTGATGACATGGATGgtataaatacagataaatatttcttgagtaATCTGGAAAAAGTTTgacttattttaatgtattgatGCGGCACGGCAGGTTTTATGTAATCATTTAACGTTAACATTTATGCTAACCGAAAAATGCATGGAAAGGGCATTataatttcttgtttttgtaaagtAATGACTGCGGTTTTATTTTACCAGCCACCTGTTAATAATAGCACATTGTTGAACATTGTGTATACTCTATGCTTAATTTTTTGTCTTGGACAAAAGCCCGAAAAAATTAAGCAGGGTTTGCCCCACCGGGTGGCGATGTTTGCCACTGTTTTAGGGCTGAATTAGCCTGGAATGACTTTGAAGCCACGTTACATAACTAGACCACAGACCTTTAAGACCACAAGCTTTATTCATTGTGGTTGAAGTTCAGCATTGTGAGGTTTGAGATTTGGATGAATACTTCTTCACCTTTTAATTGGTGTATCCTGTTGCCCAAAAATTTGAAGAGTTTCATTACAAAATACAACATATCTACATAAACAAGCCCATAATTCTTCATTTGGACTTTCTGTTATAAATTTGATTCATAATTTCAATATTATTGTAGTTagttcagttcaataaaattGTGCCTGTGTcctaatttagaatttttactcGAGTCATATTTGTATTCTCTCCTAATTTTTGTCCGTGATACGACTCTCATAGTTTCTCAAATCATTTTCTATAACCGAATTTTGACTGTTATCATAATTAGGTTTTTTATGCCatgattatgattttttttttaacctcctaactttgtctttttataattatgactTGCTGTCTGATAATTCCACATTTATCAAACATTCAACTTGATGTACAAACTggctgttaaaaaaattaacttcccctttttatttcatacgttttaaataaataacatgcaatCAGTCTGTACTACTTTCTAAGCACGTTTTGCTGAAGATCACGGTTTGGATGGCTCTCTCATGAACGAGCGCAGTAAGCCCTGCGGTGTCTGTGCTAAGTTGAGCGTGGCAGACGCTGAAGGGGTCGTTGTTTGCAGTGGCCCTTGATAATACGTGGCTTGTGTGCGACGAGCAGAGCAGAGTCTGGCAACCTCTGCCAGTCACACATCTTCTCCAGCTCCCCTGAGAGATCCCACGACCAATGAACACAAGCCCTCACTCCAGCAGTGTGCTGTGGCCACAGAGCCCTCTCAGCTTCATTAAGAGGCGCCGTCTGGAAACATGCGGGGGATTTAGGCAGCGTCAGAGATTTAGGTTACCCCTTTGGGCAACCCTTGACTCAAGTATTTCTTTACCAATGACTCAGTGAACCAGGGGGTTTCGGACGTTTTGATGCCATGTGACATATACGACGTGTTCATTTTCtcctgcattttttaaaatgtatagtcACTCTATTACACCTTACTCTTACAAATTGATTTTATTACTACTAAAAAGTCTGACAATGtaataaattagaaattaattcattttagtcttcaaaagcatgattttaaaaaagaaaccttaaaataataaaacaaaaacaatctctAAATGCgttaataaatcataaacacaCTTAGTATAACAGCCTACGTGAACTTTGGCAGCTGTAaatactttctctctctcttgaatTGTTTGTTGACCCCCTTGAGGGTTCAATAATCTGAAAACTTtgactggctttttttttttcttccttttttacttttcttccaagattgcatttcttttttcaacAAGATGTCAGAGTTGGTGCTCCTCCACTTCAAGATGGTATTGTGTGATGCTAGGCCATTGATTTTTCAGCACTCAAtaaaattttagtatttta

Function

symbol description
hpse Predicted to enable hydrolase activity, acting on glycosyl bonds. Predicted to be located in membrane. Predicted to be active in extracellular matrix. Orthologous to human HPSE (heparanase).

NR:

description
PREDICTED: heparanase-like isoform X2

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function

KEGG:

id description
K07964 HPSE; heparanase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221442.1 True 4216 mRNA 0.41 13 4698726 4704776

Neighbor

gene id symbol gene type direction distance location
helq helq,LOC107681193,LOC107591711 coding upstream 144 4692192 ~ 4698582 (+)
abraxas1 fam175a,LOC107681177,LOC107589234,LOC107703595,LOC107591751,LOC107722832 coding upstream 8387 4686916 ~ 4690339 (+)
nkx6.1 nkx6-1,nkx6.1,LOC107706438,LOC107700773,LOC107722812,LOC107703597,LOC107591753 coding upstream 110268 4585890 ~ 4588458 (+)
LOC122327011 NA coding upstream 115569 4583099 ~ 4583157 (+)
LOC122327008 NA coding upstream 116736 4581918 ~ 4581990 (+)
amacr amacr coding downstream 15980 4720756 ~ 4729360 (+)
LOC122326163 LOC107681122,LOC107589283,LOC107706442 coding downstream 49850 4754626 ~ 4757400 (+)
rai14 rai14,LOC107681156,LOC107706485,LOC107589239,LOC107750373,LOC107703593,LOC107591710 coding downstream 56389 4761165 ~ 4793419 (+)
fgf10a fgf10a,LOC107706443,LOC107589284,LOC107750480,LOC107703510,LOC107591746,LOC107681114 coding downstream 106722 4811498 ~ 4826764 (+)
ccdc80l2 ccdc80l2,LOC107706489,LOC107589242,LOC107681168,LOC107750362 coding downstream 189251 4894027 ~ 4898585 (+)
G143751 NA non-coding upstream 109574 4588726 ~ 4589152 (+)
LOC122326582 NA non-coding upstream 120598 4563334 ~ 4578128 (+)
G143745 NA non-coding upstream 146258 4551421 ~ 4552468 (+)
G143717 NA non-coding upstream 612200 4075527 ~ 4086526 (+)
LOC122326258 NA non-coding upstream 777007 3919733 ~ 3921719 (+)
G143826 NA non-coding downstream 46441 4751217 ~ 4751510 (+)
G143827 NA non-coding downstream 47131 4751907 ~ 4752259 (+)
G143872 NA non-coding downstream 95326 4800102 ~ 4862403 (+)
G143887 NA non-coding downstream 186362 4891138 ~ 4893087 (+)
LOC122326855 NA non-coding downstream 330154 5034930 ~ 5067800 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 174546 4511926 ~ 4524180 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other upstream 312514 4132436 ~ 4386212 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other upstream 484954 4106801 ~ 4213772 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other upstream 994329 3701429 ~ 3704397 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other upstream 1378713 3297990 ~ 3320013 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other downstream 381 4705157 ~ 4709441 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other downstream 25827 4730603 ~ 4745266 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other downstream 194714 4899490 ~ 4911816 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other downstream 242808 4947584 ~ 5028046 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 796327 5501103 ~ 5506433 (+)

Expression


Co-expression Network