capslb (capslb,LOC107706465,LOC107548122,LOC107682731)


Basic Information

Item Value
gene id capslb
gene name capslb,LOC107706465,LOC107548122,LOC107682731
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 6395659 ~ 6398305 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221487.1
TCGTTACCTTTCAGAGActttctgttgtgtttgtccCAAAACTTGAAGGTACTTACAAACGACCTCGAACAGTGGAGAGCTCGTAAGTTGCTTGTTTCGTATTCAAAGTTTTGTTGAGCTGTTGTTTTCGTACCGTCTGGGTGTTAAACAACAACCAGTAAACTCGAACAACAGGAAGGTCAGACGGTCGCGTTCTAATCGCTTCATCAAACACCTGAAGCGAGAATGACCAATCAAATACGAGAACTCGTCACTATGGAAACACTGAACGCTAAAACAGGAAAGAGCAAAGACGCGCTAAGGAAATCCAGATAGTTTCGACACATTAATCATCGTTTTGTTTCACTTCTCTACGTGAAGGATGGCAGGTACATCACGGCATGACCGAGAGATGGCAGTCAGTGCCAAGAAGCAGCTGACAAATTGTTCGGACCCCATTGAGCGTCTGAGGCTACAGTGTTTGGCACGAGGGTCCTCAGGGATCAAGGGACTGGGCCGGACTTTTAGGATCATGGATGACGACAACAGTCGCACGCTGGACATGAAAGAGTTCCTGAAAGGCCTGAGTGATTATGGTGTGCTCATAGAGAAAGAAGAGGCCATGAACCTTTTTCAGCAATTTGACAGAGATGGCAGTGGATTCATCGATTTTGACGAGTTTCTTATCACTCTAAGGCCACCCATGTCTAATGCCAGAAAGGAGGTGGTGCTCCAGGCATTCAAAAAACTGGATAAAACCGGAGATGGTGTGATTACAGTCGATGATCTGAGAGGAGTGTACGACGTCAAACATCACCCCAAATACCGAAACGGTGAGTGGACTGAAGACCAAGTATTCCGCAAATTCCTGGACAGTTTTGACTCTCCGGATGACAAGGATGGGAAGGTCACAAAAGAGGAATTTATGAACTACTACTCCGGCGTGAGCGCATCCATTGACACagatatatactttatattaatgatgaaaaatgcATGGAAGCTTGACTAAACATCTATTTTTGGGTGACAAAAGATGAATTCTGGAACTATTACAGCGGAGTCAGCGCTTCTATTGATAatgatgtatattttattttaatgatgaaaaatgcATGGAAGTTATGAGGGGGTTAGATAATGCTTCTTAAATCAAAG
>XM_043221488.1
TCGTTACCTTTCAGAGActttctgttgtgtttgtccCAAAACTTGAAGGTACTTACAAACGACCTCGAACAGTGGAGAGCTCGTAAGTTGCTTGTTTCGTATTCAAAGTTTTGTTGAGCTGTTGTTTTCGTACCGTCTGGGTGTTAAACAACAACCAGTAAACTCGAACAACAGGAAGGTCAGACGGTCGCGTTCTAATCGCTTCATCAAACACCTGAAGCGAGAATGACCAATCAAATACGAGAACTCGTCACTATGGAAACACTGAACGCTAAAACAGGAAAGAGCAAAGACGCGCTAAGGAAATCCAGATAGTTTCGACACATTAATCATCGTTTTGTTTCACTTCTCTACGTGAAGGATGGCAGGTACATCACGGCATGACCGAGAGATGGCAGTCAGTGCCAAGAAGCAGCTGACAAATTGTTCGGACCCCATTGAGCGTCTGAGGCTACAGTGTTTGGCACGAGGGTCCTCAGGGATCAAGGGACTGGGCCGGACTTTTAGGATCATGGATGACGACAACAGTCGCACGCTGGACATGAAAGAGTTCCTGAAAGGCCTGAGTGATTATGGTGTGCTCATAGAGAAAGAAGAGGCCATGAACCTTTTTCAGCAATTTGACAGAGATGGCAGTGGATTCATCGATTTTGACGAGTTTCTTATCACTCTAAGGCCACCCATGTCTAATGCCAGAAAGGAGGTGGTGCTCCAGGCATTCAAAAAACTGGATAAAACCGGAGATGGTGTGATTACAGTCGATGATCTGAGAGGAGTGTACGACGTCAAACATCACCCCAAATACCGAAACGGTGAGTGGACTGAAGACCAAGTATTCCGCAAATTCCTGGACAGTTTTGACTCTCCGGATGACAAGGATGGGAAGGTGACAAAAGATGAATTCTGGAACTATTACAGCGGAGTCAGCGCTTCTATTGATAatgatgtatattttattttaatgatgaaaaatgcATGGAAGTTATGAGGGGGTTAGATAATGCTTCTTAAATCAAAG

Function

symbol description
capslb Predicted to enable calcium ion binding activity. Is expressed in several structures, including Kupffer's vesicle; alar plate midbrain region; neurogenic placode; peripheral olfactory organ; and pronephric duct. Orthologous to human CAPSL (calcyphosine like).

NR:

description
calcyphosin-like protein isoform X2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23909 CAPS; calcyphosin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221487.1 True 1137 mRNA 0.44 6 6395659 6398305
XM_043221488.1 False 1018 mRNA 0.44 5 6395659 6398305

Neighbor

gene id symbol gene type direction distance location
lmbrd2b lmbrd2b,LOC107681180,LOC107548170,LOC107551632,LOC107703539 coding upstream 45 6386242 ~ 6395614 (+)
nadk2 nadk2,LOC107681150,LOC107548165,LOC107703540,LOC107551628 coding upstream 25118 6363254 ~ 6370541 (+)
myo7ab myo7a,myo7ab,LOC107706532,LOC107681153,LOC107718980 coding upstream 41894 6329293 ~ 6353765 (+)
capn5b capn5b,LOC107706463,LOC107548164,LOC108440168,LOC107718981,LOC107703490,LOC107551626 coding upstream 75432 6286144 ~ 6320227 (+)
cul5b cul5b,LOC107706462,LOC107548163,LOC107718983,LOC107681186,LOC107703544,LOC107551625 coding upstream 109848 6277379 ~ 6285811 (+)
chek1 LOC107548125,LOC107681196,LOC107706535,LOC107551636,LOC107719013,LOC107703487 coding downstream 58369 6456674 ~ 6460937 (+)
LOC122326080 LOC107719011,LOC107548127,LOC107681113,LOC107706467,LOC107551638 coding downstream 108961 6507266 ~ 6509639 (+)
LOC122326078 LOC107718966,LOC107551640,LOC107703534,LOC566907 coding downstream 115211 6513516 ~ 6515879 (+)
bud13 si:dkeyp-69c1.6,LOC107703532,LOC107718963 coding downstream 126644 6524949 ~ 6528555 (+)
arhgap42a arhgap42,LOC107703530,LOC107551641,LOC107718960 coding downstream 147766 6546071 ~ 6568023 (+)
G144212 NA non-coding upstream 332979 6062424 ~ 6062680 (+)
G144157 nkx6.1,nkx6-1,LOC107703597,LOC107700773,LOC107706438,LOC107722812 non-coding upstream 464774 5929769 ~ 5930885 (+)
LOC122326140 NA non-coding upstream 601055 5792864 ~ 5794604 (+)
G144130 NA non-coding upstream 688824 5705540 ~ 5706835 (+)
G144129 NA non-coding upstream 710562 5684828 ~ 5685097 (+)
G144308 LOC107706534,LOC107548126,LOC107681195,LOC107703486,LOC107719012,LOC107551634 non-coding downstream 64345 6462650 ~ 6462933 (+)
G144317 LOC107703481,LOC107551613 non-coding downstream 99396 6497701 ~ 6537141 (+)
G144329 NA non-coding downstream 133735 6532040 ~ 6533579 (+)
G144347 LOC107731449,LOC107681146 non-coding downstream 207176 6605481 ~ 6606030 (+)
G144348 NA non-coding downstream 208542 6606847 ~ 6607346 (+)
G144152 NA other upstream 546606 5847941 ~ 5849053 (+)
LOC122326980 tnksa,LOC107706493,LOC107681059,LOC107589272,LOC107708542,LOC107703465,LOC103369208 other upstream 595957 5794762 ~ 5799702 (+)
LOC122326918 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 other upstream 653754 5735913 ~ 5741905 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other upstream 660522 5732440 ~ 5735137 (+)
G144077 NA other upstream 884913 5508665 ~ 5510746 (+)
G144330 NA other downstream 135795 6534100 ~ 6535794 (+)
cfap300 si:rp71-1p14.7,cunh11orf70,LOC107731447,LOC107548131,LOC107681129 other downstream 184441 6582746 ~ 6585034 (+)
anapc13 anapc13,anc13,LOC107756075,LOC107693524,LOC107561055 other downstream 1509159 7907464 ~ 7909027 (+)
LOC122326775 si:dkey-183i3.9,LOC107715278,LOC107669329 other downstream 1809498 8207803 ~ 8211125 (+)
si:dkey-183i3.6 NA other downstream 1818670 8216975 ~ 8221572 (+)

Expression


Co-expression Network