LOC122326554 (LOC107708345,LOC107565383,LOC107661188,LOC107566207,LOC107722811,LOC107684913)


Basic Information

Item Value
gene id LOC122326554
gene name LOC107708345,LOC107565383,LOC107661188,LOC107566207,LOC107722811,LOC107684913
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4283196 ~ 4286425 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221520.1
GTTCACCTCAGTTTAGCAACGAATCATTCTGTCATGCTGTGCGTAGTGTAGCGGGTGAGAAATTAATTTGAAGTCGAAATGAAGGACCGTCTGGGCGATTTAACAGCCCTCTGCCATGACATTATCATCGCTCCAGTAGAGTCCAACGCTTTCCTAGAGGAATTCCTCCCCAAGGTTAATGAGGTTCAGCGACTTATACAGAGAATTTCCCTCTATGTGGAAGAAGTAAAGCTGAGACATAGTACCATTTTGACAGAAATCAACCCACCAAATTATGTGAGAGAGGAACTTGAGCAGTTTAGCAGTGACATCAAGCACACAGCCGATGTAatcaaagctaaaataaaagATTTAGAAGGAAAATTCTCAGAGTATGAGAATGCTAACAGCAGCTCCGTGTACTTTCGCATCCAGACTACTCAGCACACAGTGCTTTCACTAAGGTTTGCAGAAATAATGAATATGTACAACGAAGAACTGCTATCTTTCCGGACAAAGAGTAAAGATCACATACAAAGACAGCTGGAAATCAgtgGCCAGGTTGTCACCGAAGAGGAGACTGAGGTTTTGCTGCAAAGTAACAACCCTGCTGTGTTTACCTCAAATATCAACTCCTGCATCACGAGGCAAGCACTGAATGAGATTGAGTTACGGCATATGGATATTCTCTCTCTGGAGGCCAGCATTCGAGAGCTGCATAGCATGTTTATGGATATAGCCATGTTAGTCAATAGCCAGAGTGAAATGGCAAACAACATAGCAAAGACCGTGATGCGAGCTGGAAACTATGTAGATCAAGGGAAAGAGAACATTGAAAAAGCTGTTGATTACAAGAAGTCCTGGAGGATAAGACTGCCTATATTCAAGAGCAAAGCAAAACCAGCTACTAGCAAGAGCTCTTGAATGAATCTTGAACTTTGGAATGTAAGCTGCTTGCGTTTGAGTTgaaaaagaaggatgaaagTGAAGGATTCATATTCCTTGCCTTTTCTTTAAAATCCCATTGTGTCACAGTATTTATTCAACACCCTGTATATCTTTTTGCTGGTCAGATCATTTGTAGCTATCTTTGGGATTTGCCCATTTGCAAACAAACggcttttatttgtttctgcTTAGATGGTTAATGATTAAGCTTGCTCTCAGATACATAGACAACACTAGCAGAATTTTTCTGACGCAATATGACTACGATCACGTGAGTGTCAACAGGTGTGTTTAGATGGACTAATGTTGCTCATAGGGAATATTCACGCTATATACATTCAATACATgcttaatttattcctgttcaGGTCTACACCTCCTCTTTCCCCTCTTTCCATCAAAGACTGATTAAGGTGTTCACATACACGCTTTTCAGTCAAACTGTACCTTCTTTTTTCAATTCAATGGCAGTTGGGAAACAgacattttgtgcatttcaaCTAATGCATCTGCATTCAGAATAAGACTTTCTGACctggtttaaaaatgaaataaataagtctAGTTACA

Function

NR:

description
PREDICTED: syntaxin-2-like isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221520.1 True 1497 mRNA 0.40 9 4283196 4286425

Neighbor

gene id symbol gene type direction distance location
rimbp2a si:ch73-287m6.1,LOC107565381,LOC107708362 coding upstream 54704 4207661 ~ 4228492 (+)
LOC122326660 NA coding upstream 76515 4106787 ~ 4206681 (+)
stx2a LOC107708345,LOC107565383,LOC107661188,LOC107566207,LOC107722811,LOC107684913 coding upstream 177044 4102906 ~ 4106152 (+)
vav2 vav2,LOC107661185,LOC107722824,LOC107684912 coding upstream 208777 3947066 ~ 4074419 (+)
brd3a LOC107708359,LOC107686882,LOC107573464,LOC107741956 coding upstream 337389 3937378 ~ 3945807 (+)
LOC122326555 LOC107565381,LOC107708362 coding downstream 778 4287203 ~ 4331354 (+)
LOC122326553 si:dkey-1d7.3,LOC107565380,LOC107566205,LOC107722807 coding downstream 52547 4338972 ~ 4359303 (+)
smpd4 smpd4,LOC107706469,LOC107700779,LOC107685262,LOC107722816 coding downstream 223945 4510370 ~ 4520829 (+)
crkl crkl,LOC107706473,LOC107589229,LOC107700778,LOC107591716,LOC107722822,LOC107703602 coding downstream 251837 4538262 ~ 4544632 (+)
nefla LOC107700775,LOC107706475,LOC107589231,LOC107703600,LOC107591713,LOC107722831 coding downstream 267933 4554358 ~ 4557626 (+)
G143717 NA non-coding upstream 196670 4075527 ~ 4086526 (+)
LOC122326258 NA non-coding upstream 361477 3919733 ~ 3921719 (+)
G143664 NA non-coding upstream 479427 3803458 ~ 3803769 (+)
LOC122326834 NA non-coding upstream 513640 3763332 ~ 3769556 (+)
G143656 NA non-coding upstream 530998 3751599 ~ 3752198 (+)
G143745 NA non-coding downstream 264996 4551421 ~ 4552468 (+)
LOC122326582 NA non-coding downstream 276909 4563334 ~ 4578128 (+)
G143751 NA non-coding downstream 302301 4588726 ~ 4589152 (+)
G143826 NA non-coding downstream 464792 4751217 ~ 4751510 (+)
G143827 NA non-coding downstream 465482 4751907 ~ 4752259 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other upstream 69424 4106801 ~ 4213772 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other upstream 578799 3701429 ~ 3704397 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other upstream 963183 3297990 ~ 3320013 (+)
gnrh2 LOC107595723 other upstream 1452840 2829114 ~ 2830356 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 2046001 2233659 ~ 2237195 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other downstream 225501 4511926 ~ 4524180 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other downstream 418732 4705157 ~ 4709441 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other downstream 444178 4730603 ~ 4745266 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other downstream 613065 4899490 ~ 4911816 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other downstream 661159 4947584 ~ 5028046 (+)

Expression


Co-expression Network