ell2 (ell2,LOC107739680,LOC107665220,LOC107600927,LOC107754629)


Basic Information

Item Value
gene id ell2
gene name ell2,LOC107739680,LOC107665220,LOC107600927,LOC107754629
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1139245 ~ 1152504 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221532.1
GCATTAGAGAGAGAGTTTGCACGTATGTCAGAGGGACTATGGTGGAGGGCTGGTGAAGATGATGGCAGCTCTCTGCGAGGATGGCACATATGGACTCAACTGTGGCCGCAAAAGCgataaaatatcagttttacaTGTCAAACTGacagaaacagcctttaaagcgcTGGAAAACTACCAAAACTGTAAGAATGCACCGTCATCACAGGCGACGATACGTTTTCAGGGTCTCCAAGGGCGCATTAAAATCCCAATGACAGACGCTTCCAATGGCTGTCATAACTTCGACTTTTACCTGTCCAACTATGGCAAAGACAATCCTCAAGGAAGCTTTGAGTGTATCCACCAGTGCATGTCTAGCTCTGGAGTCCCCCATCTATCCTCCCTGGGAACGATTCAAGACAAAATCACTGTATGTGCCACCAATGACTCTTACCAGGTGACCAAAGAGCGAGTGACCAAAGCAGAGGAggataaaagcaaaaacagcacCAAATTCATCAGACCCGGAGGACCGTTCAGAGACAAAAAGGTCCAGCACCGTAAACCTGCCCCATCAGCCCCCGACCCGGTTCCAGAGAGAAAGCAGACCACGCCCCTCAACCCAGCCAACACCATCCGCAAGTGCCTTACCAACAACCCCGTATCACAACGGCCATACCGGGACCGCGTCATTCACCTTCTAGCCCTGCGCTCTTACAAGAAACTAGAGTTGCTCGGCAGACTGCAAAGAGACGGTATCAGCCAGAAAGACCGCAACTCTTTGGGCTCTACACTACATCAGGTGGCCAATCTAAACCCTAAGGATAACTCCTATTCGCTGAAGGACTTTATCTTCCGTGAGGTCCACAGGGACTGGCCGGGCTACACGGAGGATGAACGGGTTCAGTGTGACAGGATCCTGGCACGTAAATTGGGCTTGAATTCAGAGTCTGTATCTTCCAGCAGTCCAACCAAAGAGCCAACGTCCCCGGTGAAACGCCAACCCGAGACTGACTTCATTGACCCTCTGATGTCTAAGAAGCCCCGAATCTCCCATCTCAGTAACCGAGGACCCCCCTCCTCTTCAGGTCGTCATTCTTCAGAGACTGAGGAAAAACCCGCACCCACGGCGGCTTGCCCAGGACCCTCTTTTCACCCTCCCCCTGTCACAGGCTCCAGTTCAAACTCCCCCAGTACACCGGAGGGACGGGGGTCTCAGGACCTGCCCTTGGACCAGAGCTCTATATGCGGGAACTCCTCGGAGAGCTACGCCCCCCGCAGCCACACTCCCAGCCCGCCCAGCCAGCCGGTCTCCACAACGTCCCCCTCTTCCTTCTCCACATGTACCGTCTCCACAACCACCATTACCTCCACCACTACCACCAGCAGCGGCCACCGCGTTTCCTCTGCCGCATCTCCTACAGCCAACCGTGACGGCAGTGGCAGCAAAAAGCCCAAGAAGTCCAAGAAGCACAAAGATAAAGAGAAGAAACGAGAAGGAGAGAGGGATAAGGATAAGGACCGAAAGAGGAATAGAGAGCATCACAAGGAGGATCACTGCGATAAGGAAGTACAGCCCAGGAAGAAACACCGGAATgaggcagaacaaaaacacattcctGCCAACATCAGCCATGAATCGGACAAAGAAGCTGGCAAAGACAAGCCTGTCAACAGCACTGAAGTTCCAGTCCCAACAAAGCCTGATTACATTGTTAAGTACACAGCAGTGATATCTATGGATCAGAGGCAGCACTATAAGGATGACTTCAATGCAGAATATGATGAGTATCGCATCCTTCATGCGCGTGTAGAGAGTGTGACTCGTCGTTTTACAAAATTGGACGCCCAGTGTAGACGACTGGCACCGGGAACTAAAGAGTACCAGGAAGTACACGAACAGGTGCTgcaagaatataaaaaaattaaacaaCACAGCCCAAACTATTATGAAGAAAAACAGCGCTGTGAGTACCTGCACAACAAACTGGCCCACATCAAACGGCTCATCGCTGACTTCGACCAGCGGAGGGCGCAGTCCTGGCTGTAGGGCCCGGGACCAAGCAACCcccctcagccaatcagagcgctcTTCATCCGAAGGACCATCTTTAAATGAGTGTGGGAATCAAACAGCTccttatttattctatttacaGATTCCCCACTCGCCTGTTTTCCCATATCTGGCCTTCTTCATCAATCtatataatgttctttttatttatcctttCCCACACCTttcattctttccttttctttctttttgaaggacgtttcaaaagaaaaaaggacaaCAATGAAAAATTCAACTTTCTGAATGCAAAGAGAAAGTTCGCAATGCAAAACCGTGGGCCTTACAAGCTCGTATTTCTTGAAGCCTTTTGCACAGGGGTGATCGAGCCAGTACATGTGAAAAAGTGGCCATAAAAGAGGGGGTTTCCAAAAGCCTTGAGACTTCCTTTCTCCCAATGgccctgttttttttgtttttgttttttttttttcctttctttcttttgaacaGCATCAGTATTCACACCCACAGTGCAAATGATGCCTTAAGGtataaatacagacatataTCGATGTGGCGTCAGTGAGACTTACAAGCACCCAGGGCAGTGGGGAGAAATTATTATGACCTGATCGCAGGTCCAGCGCACATTCATGGAAGGTGTGATCGatgtttgcttgtgtgtgtgtgtgtgtgagagagaatgtgGCGAGTGAAATTTGTcagtgttttgttcatttttgggaaGGATTGTGGGTCAGAAACTACAGGTAGAGAGAGGCTCTGAGAGGAGGTTtggatataaattatattaaaaaaaaaaaaaagaggaaaaaaaaccgGAAAATAAAaatccccccccaaaaaaagctgctatatatattttttttttctttttctttgaacaGCCGGATCCTTCGGGATCAACCTGGCTCATGTTACATGTTCTTAATTTGGGCCTGCTCTGTTTAAGAAAATGATTGTACCATCTTCAAGGCAAAGGTGCTACTGATTTCTGAGAAAATGCATAGAGCAGAGGCAGACCTGTATatccatttcaaatgtattcattaattattacaaGTCTCAGAACAgagttatttatgaaatatgaatagaattatatattttttgtcttcattttgaattaaaaggTATTGCTGGAATTGAGAATTGAAGAAGAAACTGATCAAATATGCGTTAAAGTCTTTATTTCACGGTATCATTAGTGATTCAACAACTTAAGGGAAGCGTTATGTTTACAAAACCTGTGTGATAGGAAgttttgccaaaaaaaagtgattaaaatgaAACGAATGCTTTCAATCCTATGTTGATAGTCTGgaataaaacgtgtttctctGAGTGACATGACACTTTGTTATCTGAAAGGAGATGGTGGTCGAACACTTAGTgtcttgatatatttattttctttgatccTTGTTTAGGGAGAAGATACAGAATGCAGCTTTGTGAATcggctttggaaaaaaaactaacaaaagatgaaaaaaactCGCAGTTATGCAAATTCTCACTGGATCAAATGGCTCCAtggtggattctgattggctagtTGATTCTCGAGGCTCGCTGCATtgtatttgcacattttaagaTGTCTTTTTGAAATCTGAAAACAAATCATCTCTCTCTTATGATCACAGTTATTCCATTGTTAAAGACTGGGAGGTGTTTCCTTTGTTTTCCAGTGTTGTaaattgaaaggaaaaaaacttaAGTGAGCCATTCTCAGAATAACCATCGATGAATGTTCGTTTTCAGTATTTGGGGCGGCAGATGGCATCTTGcttgcttacttttttttttaaggggcttACATGTTATCAAACTCCCCAAGATGTTCTGTTATGTGAGCTTCTGTTCATTTTAGTCACCATTAATAGACTGCACGCAATGTCTGATGACAACCGAATACAAGTCATGGTTATTTAACAGAGAACTATAGCAGCACTTTACTTCGCAGACGCTTATTTCCTCAGCATTCAAATAGCCTCCACACTGAACCTTAAAGATTTGGGATGACACTAAGAAGTGTTGCTTGCAAAGGAGAATGTGCATCTACACACCGGTATCTTTGTAATTTGGGTTGGGTGGGGAAGTATTTGGTGATGTGTGACCAACACctgttttctttcccttttgAAGAGACTGTGCCTCTGACACCACTAAAGAGAGATGTTAATGTTGGATAATAAGCCAAGAATCTCATAACACTGTCATCTCTTGTTTTAAAGGTGGGATGGGGGTTATTTCAGACTGTAAGAGAATTCCTGACCTGTCcacctaaaaatgtattaaatcagTTCAATAAAATGTGAACTTGA

Function

symbol description
ell2 Predicted to act upstream of or within transcription elongation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Is expressed in several structures, including anterior axial hypoblast; hatching gland; mesoderm; musculature system; and sensory system. Orthologous to human ELL2 (elongation factor for RNA polymerase II 2).

NR:

description
RNA polymerase II elongation factor ELL2-like

GO:

id name namespace
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0008023 transcription elongation factor complex cellular_component

KEGG:

id description
K15183 ELL; RNA polymerase II elongation factor ELL

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221532.1 True 4350 mRNA 0.44 13 1139245 1152504

Neighbor

gene id symbol gene type direction distance location
pcsk1 LOC107739678,LOC107661910,LOC107600928,LOC107665244 coding upstream 7620 1116591 ~ 1131625 (+)
cd8a NA coding upstream 62109 1074249 ~ 1077136 (+)
cd8b LOC107754642,LOC107665224,LOC107600931,LOC107739674,LOC107662663 coding upstream 70882 1064842 ~ 1068363 (+)
zmat1 krcc1,LOC107600930,LOC107662001,LOC107739673,LOC107584622 coding upstream 76105 1056331 ~ 1063140 (+)
grin1a grin1a,LOC107662014,LOC107754622,LOC108435476,LOC108278500,LOC107600932 coding upstream 91234 1023624 ~ 1048011 (+)
nudt2 nudt2,LOC107739745,LOC107661859,LOC107600925,LOC107579639,LOC107584670,LOC107754633,LOC107665228 coding downstream 27951 1180455 ~ 1184070 (+)
ubap1 ubap1,LOC107661828,LOC107739682,LOC107754631,LOC107665242 coding downstream 39895 1192399 ~ 1199773 (+)
dcaf12 dcaf12,LOC107661821,LOC107739683,LOC107600922,LOC107754635,LOC107584538,LOC107665237 coding downstream 50890 1203394 ~ 1212789 (+)
ubap2a ubap2a,ubap2,LOC107665236,LOC107661806 coding downstream 61396 1213900 ~ 1227997 (+)
mlnl mlnl coding downstream 85951 1238455 ~ 1241794 (+)
G142964 NA non-coding upstream 32293 1106746 ~ 1106952 (+)
G142963 NA non-coding upstream 33428 1105485 ~ 1105817 (+)
G142954 NA non-coding upstream 37138 1090243 ~ 1102107 (+)
G142933 NA non-coding upstream 55972 1082167 ~ 1083273 (+)
G142941 NA non-coding upstream 65204 1072268 ~ 1074041 (+)
G142952 NA non-coding downstream 48232 1200736 ~ 1201244 (+)
G142950 NA non-coding downstream 48872 1201376 ~ 1202423 (+)
G142977 LOC107662880 non-coding downstream 63086 1215590 ~ 1246809 (+)
G142943 NA non-coding downstream 77044 1229548 ~ 1236155 (+)
G143139 wdr34,LOC107736865,LOC107584613 non-coding downstream 609878 1762382 ~ 1762837 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 83320 1050838 ~ 1055925 (+)
alpk2 LOC107600938,LOC107662700 other upstream 333139 735722 ~ 806106 (+)
glrx glrx,LOC107661879,LOC107665229 other downstream 600 1153104 ~ 1156142 (+)
LOC122326311 NA other downstream 75494 1227998 ~ 1229055 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other downstream 877600 2030104 ~ 2056679 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 1081155 2233659 ~ 2237195 (+)
gnrh2 LOC107595723 other downstream 1676610 2829114 ~ 2830356 (+)

Expression


Co-expression Network