G12896


Basic Information

Item Value
gene id G12896
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 358871 ~ 359739 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU14335
ATGACAGAATTGTCATTTTTGGGCGAACTATCCCTTTAACCCAACCTCTGGGTTAAAACAACCCAATCACTGGCTTTGTCCATTTTCAACCCAACTTGGGTTGTTTTTAACCCAGCAGTTTTTAGTGTGAATCATGACGTAATAAGCAGAATCTCTTTAAATCTGAAATGCTGCTACCTATGTCTTTCCTCTGCCTTATCAAATGAAGTGAAGTTTTGAGGATTTGTTTGTAGAGCTGTTGATAAAGGGCTGATTTGTTTTTGTTTTTTTTTGAAAACTCCTCTGTTCATCAATAGGCTCGTAACACGAGCTGTCGGTACGGCCCTGTAAGTGCTGCTGCATCATGTAGCTGTTTCCATCCCAGCCCTGTGAGATACAAACAATCAATATGTCATGGGGCTCATGGAAAACCAAGTATCCTATATAGGACATATTATAAAGCGATTTCTCTTGTAAACAACAAAAGACTATCTGTGATTTTGTTGTAATCAGTATCAGTGGATGGTCAGTGGACACCATGCAAAAAAAAAGAAGCAGGGATCAATTACATATCTTGAAATGAAGAAACTGTAAATCTTGATATGCAAATGCTAAAAAAGTATACAGAAATGTTGCACAAAATCTGTTCGCAGATCTCATGAAATGGTGGGTGAAGGTTTAAAACAAGCACAACTTGTTTACTGAGATGTCAGGGACAGATTTTTTAGTAAAGACTTATTTAAAGAGCACTTGTCATAAAGCACCCATGTGCCCTTTTACCTAACCAACAGCACTGAGTACCACTTTAAAAAACTGAAGCGTTTTCTCCCAACCAAGTCGATCTATATGCATGTACAAATTATGAAAATCAATAAAACTTTTTATCTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14335 True 869 lncRNA 0.42 1 358871 359739

Neighbor

gene id symbol gene type direction distance location
CI01000001_00305883_00333574 FYCO1A coding downstream 25073 305491 ~ 333798 (-)
CI01000001_00238241_00249437 NA coding downstream 109434 238241 ~ 249437 (-)
CI01000001_00222940_00227735 NA coding downstream 130864 222800 ~ 228007 (-)
CI01000001_00218182_00220017 NA coding downstream 138755 217657 ~ 220116 (-)
CI01000001_00192545_00195828 FAM46A.L, FAM46AB, FAM46A, FAM46AA coding downstream 162040 191931 ~ 196831 (-)
CI01000001_00362143_00378213 NA coding upstream 1875 361614 ~ 378213 (-)
CI01000001_00445369_00466166 TMCO4 coding upstream 85501 445240 ~ 466897 (-)
CI01000001_00493196_00498517 OTUD3 coding upstream 133026 492765 ~ 498517 (-)
CI01000001_00500347_00500698 G0S2 coding upstream 140344 500083 ~ 500698 (-)
CI01000001_00506140_00517386 CAMK1GB, CAMK1G coding upstream 146015 505754 ~ 517386 (-)
G12933 NA non-coding downstream 22838 335725 ~ 336033 (-)
G12921 NA non-coding downstream 76089 282555 ~ 282782 (-)
G12920 NA non-coding downstream 80582 278044 ~ 278289 (-)
G12873 NA non-coding downstream 146625 211309 ~ 212246 (-)
G12880 NA non-coding downstream 149513 209149 ~ 209358 (-)
G12945 NA non-coding upstream 45592 405331 ~ 406159 (-)
G12946 NA non-coding upstream 53945 413684 ~ 413948 (-)
G12955 NA non-coding upstream 145110 504849 ~ 505048 (-)
CI01000001_00538192_00559082 MICAL1 non-coding upstream 193664 537593 ~ 559082 (-)
G12963 NA non-coding upstream 245362 605101 ~ 606584 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 223946 122814 ~ 131380 (-)
G14104 NA other upstream 1403930 1763669 ~ 1771468 (-)
G14219 NA other upstream 1634471 1994210 ~ 1994898 (-)
G14228 NA other upstream 1696235 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 1899650 2258442 ~ 2263103 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022586 NA non-coding NC_007134.7 CM002907.2 39940240 ~ 39942116 (-)