abraxas1 (fam175a,LOC107681177,LOC107589234,LOC107703595,LOC107591751,LOC107722832)


Basic Information

Item Value
gene id abraxas1
gene name fam175a,LOC107681177,LOC107589234,LOC107703595,LOC107591751,LOC107722832
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4686916 ~ 4690339 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221551.1
GAGTTCAGCTTTAAACCGCCGTCTTTAACGCAGAGAATAACTAAACGAAACCTTCAAGCGCAGAAAGTTTACACATGTAGCCTGGTAACTTAAAACTATGAAGTTGAGGTAGTTAACTCGCGGTTTAGCCCAAAAGCATGGAGGAATTCAACACGACCGTTCGCATATCGGGTTTCGCGTTGAGTTCACTGATGTTTCATCATTTGAACAGTGATGCGGATGTGGAAGGTCTTATTCTTGGAGAGAGTGTGGGAGAGGAGAACTGCAGGATCACAGACTCACAGATTGATCACATACAGTTTGAGCACACTTTAAATATACAGAAACACATCCCTTGTCATAAACTCCATAGCTTCTATAGTAATGTCGGTGGCGTCAGCGAGgagaaaataagacaaattTTGTCTGATTACCGAGAGGAGAATGTGATTGGTTGGTACAGACAAAGAAGAAACACCAGACAGCGAATGACTTTTATGGAAAAAGTGGTTCATCAGAATATGAGAAAGATCCTGTCCAATCAGGAGCTTGTTTTCATGCTGCTCACACCGTCTCAGGCCACAGCGTCGGGCTCCACCCATCGACTCGAGTTCTCTGCTTTCATACAGCACAGCAGACAGTACATCAACATCCCCATCTTTGTGAGCAACCTGGGAAACCTGGAACAACAGGACTACTGGGGAGTGTCGGGCACGTGTCCGTCTTTAGGAGAGAGTCGAGCTGTCAATCAACACCGGACAAAATTCTTCTGCTCAGGTGATGATTTAAAAGAGGTGAAAAATATCAGCAGCATGAATGATGCCCTATTGGGAGAAATGCAGGAAGTGTGTGACAAAGTAGAGAAGAGTGAAAGGGCAGTAGAGACGCTTCAAGAAGAGATCAAACAGCTGAAGGAGGAGATCAAGAAAAActcagagaaaaataaaaCCCAGAAACATCCCTCTCCAGAGGACCCCAAAGAGAATGTGCTTCTGTGCTCAGCTCTCAGAACGCTCTTCCCCGATGCGCCTTCATTACGGACACAAACCCTCACTGTTCAGGGTCTCCCTGTATTAGAACTGTGCTGCGGCACCGACCATAACACTGATATCGCCACCAAGCTGCCTCTGATTCTGGAGAACCAACACACCAGAAAGAAGGACACAGCCCCACGACTCAGGAAAAAATGCCTCGTCGCTTGTTATCCTCAAAGACTTAACAGGAAGAGGAAAGCTAAAGACACCAGCGAGTCGGCCTCGGACAGCGGGTCAGACACAGAGATTGAGATGAACGGACAGAACAGAAGCGTCTCTCCGACCTTTTAAAGAACGAAGCCGGGCGTGGTTTTATTGGTACAGCAATCTGGTCACGACTGaaaagcatttcaaattttatacCCGAGGCTACCTTTATCTTAACATGCGTTAAttgtttaatatcttttttgttgtttatttgttagtGTTTATAAATTCCTTGAACATTAAATACTGAATTCACA

Function

symbol description
fam175a BRCA1-A complex subunit Abraxas

NR:

description
BRCA1-A complex subunit Abraxas

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0031572 G2 DNA damage checkpoint biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0070531 BRCA1-A complex cellular_component
GO:0031593 polyubiquitin modification-dependent protein binding molecular_function

KEGG:

id description
K20774 FAM175A, ABRA1; BRCA1-A complex subunit Abraxas

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221551.1 True 1480 mRNA 0.45 9 4686916 4690339

Neighbor

gene id symbol gene type direction distance location
nkx6.1 nkx6-1,nkx6.1,LOC107706438,LOC107700773,LOC107722812,LOC107703597,LOC107591753 coding upstream 98458 4585890 ~ 4588458 (+)
rpl17 rpl17,LOC107722835,LOC107700774,LOC107703598 coding upstream 103614 4580634 ~ 4583302 (+)
LOC122327011 NA coding upstream 103759 4583099 ~ 4583157 (+)
LOC122327008 NA coding upstream 104926 4581918 ~ 4581990 (+)
LOC122327010 NA coding upstream 105790 4581051 ~ 4581126 (+)
helq helq,LOC107681193,LOC107591711 coding downstream 1853 4692192 ~ 4698582 (+)
hpse hpse coding downstream 8387 4698726 ~ 4704776 (+)
amacr amacr coding downstream 30417 4720756 ~ 4729360 (+)
LOC122326163 LOC107681122,LOC107589283,LOC107706442 coding downstream 64287 4754626 ~ 4757400 (+)
rai14 rai14,LOC107681156,LOC107706485,LOC107589239,LOC107750373,LOC107703593,LOC107591710 coding downstream 70826 4761165 ~ 4793419 (+)
G143751 NA non-coding upstream 97764 4588726 ~ 4589152 (+)
LOC122326582 NA non-coding upstream 108788 4563334 ~ 4578128 (+)
G143745 NA non-coding upstream 134448 4551421 ~ 4552468 (+)
G143717 NA non-coding upstream 600390 4075527 ~ 4086526 (+)
LOC122326258 NA non-coding upstream 765197 3919733 ~ 3921719 (+)
G143826 NA non-coding downstream 60878 4751217 ~ 4751510 (+)
G143827 NA non-coding downstream 61568 4751907 ~ 4752259 (+)
G143872 NA non-coding downstream 109763 4800102 ~ 4862403 (+)
G143887 NA non-coding downstream 200799 4891138 ~ 4893087 (+)
LOC122326855 NA non-coding downstream 344591 5034930 ~ 5067800 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 162736 4511926 ~ 4524180 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other upstream 300704 4132436 ~ 4386212 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other upstream 473144 4106801 ~ 4213772 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other upstream 982519 3701429 ~ 3704397 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other upstream 1366903 3297990 ~ 3320013 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other downstream 14818 4705157 ~ 4709441 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other downstream 40264 4730603 ~ 4745266 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other downstream 209151 4899490 ~ 4911816 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other downstream 257245 4947584 ~ 5028046 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 810764 5501103 ~ 5506433 (+)

Expression


Co-expression Network