Item | Value |
---|---|
gene id | rxraa |
gene name | rxraa,rxra,LOC107708356,LOC107679846,LOC107556936,LOC107686886,LOC107573462 |
gene type | coding |
species | tiger barb (Puntius tetrazona) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_056719.1 |
NCBI id | CM032088.1 |
chromosome length | 19199999 |
location | 3786759 ~ 3918707 (+) |
genome version | ASM1883169v1_2021_tiger_barb_Genome |
symbol | description |
---|---|
rxraa | Predicted to enable nuclear receptor activity and retinoic acid-responsive element binding activity. Predicted to be involved in several processes, including regulation of transcription by RNA polymerase II; response to retinoic acid; and retinoic acid receptor signaling pathway. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in several structures, including digestive system; nervous system; neural crest; optic vesicle; and segmental plate. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RXRA (retinoid X receptor alpha). |
rxra | Enables several functions, including nuclear receptor activity; protein domain specific binding activity; and retinoic acid binding activity. Contributes to vitamin D response element binding activity. Involved in several processes, including intracellular receptor signaling pathway; regulation of transcription, DNA-templated; and response to retinoic acid. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in chromatin and nucleus. Part of RNA polymerase II transcription regulator complex and receptor complex. Implicated in pancreatic cancer. Biomarker of pancreatic ductal carcinoma. |
description |
---|
PREDICTED: retinoic acid receptor RXR-alpha isoform X1 |
id | name | namespace |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0043401 | steroid hormone mediated signaling pathway | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0043565 | sequence-specific DNA binding | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
GO:0003707 | steroid hormone receptor activity | molecular_function |
GO:0008270 | zinc ion binding | molecular_function |
id | description |
---|---|
K08524 | RXRA, NR2B1; retinoid X receptor alpha |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_043221650.1 | False | 4501 | mRNA | 0.45 | 12 | 3786762 | 3918707 |
XM_043221651.1 | True | 4610 | mRNA | 0.46 | 12 | 3827238 | 3918707 |
XM_043221652.1 | False | 4483 | mRNA | 0.45 | 12 | 3786765 | 3918707 |
XM_043221653.1 | False | 4435 | mRNA | 0.45 | 11 | 3786759 | 3918707 |
XM_043221654.1 | False | 4542 | mRNA | 0.46 | 11 | 3827237 | 3918707 |
XM_043221655.1 | False | 4418 | mRNA | 0.46 | 11 | 3786761 | 3918707 |
XM_043221656.1 | False | 4329 | mRNA | 0.45 | 10 | 3883159 | 3918707 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
stom | stom,LOC107741953,LOC107556938,LOC107708355 | coding | upstream | 38352 | 3737381 ~ 3748407 (+) |
tsc1b | tsc1,tsc1b,LOC107595695,LOC107556942 | coding | upstream | 152584 | 3617039 ~ 3634175 (+) |
trnam-cau_115 | NA | coding | upstream | 171528 | 3615160 ~ 3615231 (+) |
bcr | bcr,LOC107595694,LOC107679847,LOC107556943,LOC105889081,LOC105014833,LOC106566295 | coding | upstream | 184279 | 3544243 ~ 3602480 (+) |
atp2a2b | atp2a2b,atp2a2,LOC107708347,LOC107556944,LOC108444117 | coding | upstream | 244021 | 3514033 ~ 3542738 (+) |
brd3a | LOC107708359,LOC107686882,LOC107573464,LOC107741956 | coding | downstream | 18671 | 3937378 ~ 3945807 (+) |
vav2 | vav2,LOC107661185,LOC107722824,LOC107684912 | coding | downstream | 28359 | 3947066 ~ 4074419 (+) |
stx2a | LOC107708345,LOC107565383,LOC107661188,LOC107566207,LOC107722811,LOC107684913 | coding | downstream | 184199 | 4102906 ~ 4106152 (+) |
LOC122326660 | NA | coding | downstream | 188080 | 4106787 ~ 4206681 (+) |
rimbp2a | si:ch73-287m6.1,LOC107565381,LOC107708362 | coding | downstream | 288954 | 4207661 ~ 4228492 (+) |
LOC122326834 | NA | non-coding | upstream | 17203 | 3763332 ~ 3769556 (+) |
G143656 | NA | non-coding | upstream | 34561 | 3751599 ~ 3752198 (+) |
G143638 | NA | non-coding | upstream | 176709 | 3608919 ~ 3610050 (+) |
G143590 | NA | non-coding | upstream | 294172 | 3488511 ~ 3492587 (+) |
LOC122326852 | NA | non-coding | upstream | 450070 | 3336261 ~ 3336689 (+) |
LOC122326258 | NA | non-coding | downstream | 1026 | 3919733 ~ 3921719 (+) |
G143717 | NA | non-coding | downstream | 156820 | 4075527 ~ 4086526 (+) |
G143745 | NA | non-coding | downstream | 632714 | 4551421 ~ 4552468 (+) |
LOC122326582 | NA | non-coding | downstream | 644627 | 4563334 ~ 4578128 (+) |
G143751 | NA | non-coding | downstream | 670019 | 4588726 ~ 4589152 (+) |
G143650 | barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 | other | upstream | 82362 | 3701429 ~ 3704397 (+) |
LOC122326950 | ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 | other | upstream | 466746 | 3297990 ~ 3320013 (+) |
gnrh2 | LOC107595723 | other | upstream | 956403 | 2829114 ~ 2830356 (+) |
G143321 | LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 | other | upstream | 1549564 | 2233659 ~ 2237195 (+) |
stxbp1a | stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 | other | upstream | 1730080 | 2030104 ~ 2056679 (+) |
G143725 | si:ch73-287m6.1,LOC107565381,LOC107708362 | other | downstream | 188094 | 4106801 ~ 4213772 (+) |
G143726 | si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 | other | downstream | 213729 | 4132436 ~ 4386212 (+) |
si:ch211-222n4.2 | LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 | other | downstream | 593219 | 4511926 ~ 4524180 (+) |
btc | LOC107706483,LOC107681194,LOC107722828,LOC107703511 | other | downstream | 786450 | 4705157 ~ 4709441 (+) |
slc45a2 | slc45a2,LOC107589269,LOC107681104,LOC107591731 | other | downstream | 811896 | 4730603 ~ 4745266 (+) |