dcaf12 (dcaf12,LOC107661821,LOC107739683,LOC107600922,LOC107754635,LOC107584538,LOC107665237)


Basic Information

Item Value
gene id dcaf12
gene name dcaf12,LOC107661821,LOC107739683,LOC107600922,LOC107754635,LOC107584538,LOC107665237
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1203394 ~ 1212789 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221700.1
GCGCTGTACGTTTTCGGATGACGCGTTTTGTCAGGAGAACGACGGacagagagcgagcgagagagagagagagagagagaaagaagataGGTGAAAAGTGAGCTCGGTGCAGGGGAGGGGCAGCAGTACCCTTGTAGCTCCTCCACACAGACGAAAACCAAACAAGCCTGCcctaaaaaaacacccaaatcACAAGGATCGGTGATCGGCCACTGCGACGGAATCGGACGGTTATTCGATTCAGAACCGTCCGACTCGACTCGGCTGGATTCGATTAGTCGCGTCGCTCCACCAGCCCAGAGGCCGCCGAAACAAACCCCATCGCCATTATATGATCCACTTCCCAGCGTCGCTGCTGCCCTCCATGTGGGTGAGGGACCTGTGCGTGTCGGGCTATGGCGAGAAAAACAGTTAGCAGGAAAAGGAAAGCAGAGGAGCCCAAGGAACAACAGTTTGACTGGTGTCAGTCTGCGATTAAGCGTGCCCGCGTGTCCAGCTCAGCGCGTCATGCCCAGCCCTGGTGGCAGAGTCGGCGGTCGGTGGTGTGCTCTGTGAGAGGAAGGGAGTTCCGCCCACAGCAGCAGCATGAATGGAGCTTCCAGCGGAGTCTGCGCGGATTTGCTGCCGGACGCATCCCAGGAatcctcagagagagagagttctcCCTCGGCCGCCTCAACAAGGTCTTCGCTTCCCAGTGGCTCAACCAGAGGCAGGTGGTGTGTGGGACCAAATGCAACACGCTATTTGTGGTAGACGTCCTCTCGGGACAGATTACCAGGATACCCATGCTGAAAGACAGAGAGGGAAGGGCAGAGGTTTCCCAGGGTTTGAGTGGAGTGGGGGGCAATTTCCACTTCCACAATCCAGGACCAGTCGGCGGTCTAGATGTCCAGCAGGGATGTGGCATCCACGCCATTGAGCTGAACCCCTCTCGTACATTGTTGGCCACTGGAGGAGACAACCCCAACAGCCTGGCAGTGTACAGACTTCCCACTCTTGACCCTGTCTGTGTCGGGGATGATGGACACAACGACTGGATATTCTCCATTGCGTGGATCAGTGACACCATGGCAGTCTCAGGATCCCGTGACGGTTCCATGGGTCTGTGGGAGATATCAGAGGAGGTGCTGACTCAGGCCGAGAAGCGTCAGAATGTGGAAGGTGTTCCTTGTTACTCCTACATTTCTCACCGCGCTCTCAAGGACATCCCGAAAGAGTACACCCACCCCTACAATTGCAAAGTGCGTGCACTGGCCTTCAACAACAGCCATAAGGAGTTGGGTGCCGTTTCTTTAGATGGATATTTCCATCTGTGGAAGGCAGAAGACAACCTGTGCAAGGAACTTTCTACCAAACTCCCTTACTGTAAGGAGAACGTGTGTCTGGCATACGGTCTGGATTGGTCCGTTTACGCAGTCGGCTCCCAGGCACACGTTTCCTTCCTTGACCCCCGGCAGTCATCTCAGAACATCAAATCTGTGAGCTCCAGGGAGCGCGGCAGTGGTATTCGCTCTGTGAGCTTCTATGAACACATAGTGACGGTAGGCACTGGCCAAGGTTCCCTGCTCTTCTACGATATCAGGGCTCAGCGTTTTCTGGATGGTCCATCCAGCTCACCCGCCGGGTACCGGAATCGCACAGCAGAGGGCATCCTGAAACTCACCACAGGGAGGGGATGGCTGAATCACGACGAAACATGGAGAAGTTATTTTTCAGATGTCCACTCCTTCCCGAATGCCGTATACACGCACTGCTATGACGACTCCGGCACCAAACTTTTCGTGGCCGGCGGCCCCCTGTGTTCAGGCCTACACGGAAACTACGCTGGTCTCTGGAGTTAGCCTCCATCATCCTTCCATTTCCCTCTCACGTACCATGTGCTTTCATCATCCATTTTCTCCtcactcattttcatttccGGTTTAGCTTCTATCCACGATCATCCTCTCTTTCTCAAAGGACTCAGGAGCATAGATGTGGTTCTCTACTGTTTATGTGCTTGGTCTCATGTCTTTCAATTTTCATTTGCCTGGTGTCCTCCTGAatttatatgtgtttatgtttgtgtgtgtgcgtatgtgtgtgtgtgtggggagaaaaaaaaggcaaagaaaaagaaaaggcatGACCAGCACTGATGCCTGATCTTAAGAGAGGAGTCTGGAAAGGATGAAAGAGGTTTTTTTCCTCTGTACATCAGCTGGCTGAACCTTTGAGAACTGTGgaattgtgtaaaatatatgaaaatatttaacagtCTCTCTGTTAggcattgttttttcttttttataaaagacatggcgttttgagtttgttttgctgtgtttttttttttttccaaagaccTGCCAATTAGCTCATTTTCTTGGCTCGCAGTGGACTGATAAGACATTGTAGAACCTCAAAAGGCTGAAAATCGGCATTAAAGATGAATCTTGGTGAAATGAACGGACAGCCTGACCTCTAACCTCGCTGTGGACACTGAGGTCAAGACTGCAGTTATATGAAGAGCACAGAGTGAACGTGGACACGAGTCGGATAGCGTTCAATGAAGACACACccgctgtttttctttttcctctttttccaaAATAATGGCAGGGAGAGACAAATCGCAGAATCCGTTTGTGTTCTGTTTGAGGTATCTTGGAGAATGCCTCTTTTTATTGCTGATTCTGTACTAACACGCATAAGCTCGCATCAAGATTGCAATTTTCCCTCTGTGACATTTAGAcgtcttatttattttgtattgttgcTGTCACTAGCACTCATGACGTTCAGGTACAATCATATTTGTTAGGATTTTTGCTTCTCATCTTCTCTGCTTAAAGGCAGGGCAGTGTTGTGTGACATTGTTGCCTTTTCAGAGTCTTTCTGTGAAAGACTGTTGCAGATTGAATTTGTTTAggcctttttttgtctttttacatGATGATCTTCATGGAATTGTCACAAAATTGCTAGTACAATGAACACCGTAACAGGCATATATTAAGCAGAAATTACCcatcacttttaaaatgtattttatatataaatgtaaatgtatacatatttggAATCTAATAGAGGGAGATTACAATTTATGTAAATGTCAGAggatatatgtgcgtgtgtgagtgaactaatctgtcattattttggTGGTGCCCTTTTTTATACTCACTTCCTGAATGTTTTTACAGACTACAAGTGTAAAGATATTGTacaatatcaaaacaaaacagaagaacaGCAACACGAGACattcttcaaaaagaaaatgaataaaagtttattgatgtatttttctTCCA

Function

symbol description
dcaf12 Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm and microtubule organizing center. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to several human genes including DCAF12 (DDB1 and CUL4 associated factor 12).

NR:

description
DDB1- and CUL4-associated factor 12-like isoform X1

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K11803 DCAF12; DDB1- and CUL4-associated factor 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221700.1 True 3302 mRNA 0.47 9 1203394 1212789

Neighbor

gene id symbol gene type direction distance location
ubap1 ubap1,LOC107661828,LOC107739682,LOC107754631,LOC107665242 coding upstream 3621 1192399 ~ 1199773 (+)
nudt2 nudt2,LOC107739745,LOC107661859,LOC107600925,LOC107579639,LOC107584670,LOC107754633,LOC107665228 coding upstream 19324 1180455 ~ 1184070 (+)
ell2 ell2,LOC107739680,LOC107665220,LOC107600927,LOC107754629 coding upstream 50890 1139245 ~ 1152504 (+)
pcsk1 LOC107739678,LOC107661910,LOC107600928,LOC107665244 coding upstream 71769 1116591 ~ 1131625 (+)
cd8a NA coding upstream 126258 1074249 ~ 1077136 (+)
ubap2a ubap2a,ubap2,LOC107665236,LOC107661806 coding downstream 1111 1213900 ~ 1227997 (+)
mlnl mlnl coding downstream 25666 1238455 ~ 1241794 (+)
aqp7 aqp7,LOC107661734,LOC107600917,LOC107739721 coding downstream 35325 1248114 ~ 1255051 (+)
kiaa1328 kiaa1328,LOC107600915,LOC107661705 coding downstream 45387 1258176 ~ 1277613 (+)
odf2a LOC107600900,LOC107739747,LOC107736864,LOC107675630,LOC107584531 coding downstream 510064 1722853 ~ 1731673 (+)
G142950 NA non-coding upstream 971 1201376 ~ 1202423 (+)
G142952 NA non-coding upstream 2150 1200736 ~ 1201244 (+)
G142965 rfesd,LOC107661841,LOC107600903,LOC107735162 non-coding upstream 24755 1108322 ~ 1178639 (+)
G142964 NA non-coding upstream 96442 1106746 ~ 1106952 (+)
G142963 NA non-coding upstream 97577 1105485 ~ 1105817 (+)
G142977 LOC107662880 non-coding downstream 2801 1215590 ~ 1246809 (+)
G142943 NA non-coding downstream 16759 1229548 ~ 1236155 (+)
G143139 wdr34,LOC107736865,LOC107584613 non-coding downstream 549593 1762382 ~ 1762837 (+)
G143140 NA non-coding downstream 550687 1763476 ~ 1763743 (+)
G143144 NA non-coding downstream 551972 1764761 ~ 1765095 (+)
glrx glrx,LOC107661879,LOC107665229 other upstream 47252 1153104 ~ 1156142 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 147469 1050838 ~ 1055925 (+)
alpk2 LOC107600938,LOC107662700 other upstream 397288 735722 ~ 806106 (+)
LOC122326311 NA other downstream 15209 1227998 ~ 1229055 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other downstream 817315 2030104 ~ 2056679 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 1020870 2233659 ~ 2237195 (+)
gnrh2 LOC107595723 other downstream 1616325 2829114 ~ 2830356 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 2085201 3297990 ~ 3320013 (+)

Expression


Co-expression Network