LOC122326643 (oxct1b,LOC107703571,LOC107591691,LOC107681133,LOC108439614,LOC107711896)


Basic Information

Item Value
gene id LOC122326643
gene name oxct1b,LOC107703571,LOC107591691,LOC107681133,LOC108439614,LOC107711896
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5308926 ~ 5314409 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221710.1
AAAACCCGCCCTTTGCCCTATTTTAAAACGGAGCAGGATTGATCCAGGTTCTGTGGTAGACAGTGATTACTTTCCTGTAAAAAATTTAGGTtgttcttaaaaatgtcttttcagaGATTTTTATCTAGGTCAGATGCTCTTCTCAGAGGCAGACTATTATCTTTAACACAGCATGGGTGTATTTATCATCATGGTAAGGAATTCAACTGCTCTCATTTCTCAACCTCCCGGTCAAGGAGTGCGTGTTTTTATTCGGACCCCTCAGAGGCCGTCAGAGACATTCCTAATGGCTCCATGCTTCTTGTCGGAGGCTTTGGTTTGTGTGGGATCCCGGAGAATTTAATCAGCGGCCTGTTGAAAACAGGAGTAAAAGAAATCACAGCCGTGAGCAACAATGCTGGGGTTGATAACTTTGGCCTGGGAATGCTTCTGAAAACCAAACAGATAAAACGCATGATATCTTCATATGTTGGGGAAAACGCTGAGTTTGAGAGACAATATCTATCAGGCGAGCTGGAATTAGAGCTTACTCCTCAGGGCACACTAGCAGAGAGGATAAGGGCTGGCGGTGCAGGCATCCCAGCATTTTTTACTCCCACCGGATTTGGCACTCTTATCCAGGAGGGTGGATCACcgataaaatacaacaaagatGGCAGCATTGCTATCGCAAGCGAACGCAGAGAGGTACGAGAGTTTAATGGCAGACATTATGTCATGGAAAAGGCCATCAGGGGCGACTTTGCTTTGATAAAGGCCTGGAAATGTGACAAAGCAGGGAATCTTATTTTCAGgaaaacaacTCGTAATTTCAACCAGCCTATGTGTAAAGCAGCCAAACTTACAATAGTGGAGGTTGAGGAGATTGTTGATATTGGAAGTTTTAGTCCTGAGGACATTCACATCCCTTCCATATATGTAGACAGGGTAGTTCAAGGAGCCAGCTATGAAAAACGAATTGAGAAAAGGCTGGTTCAGTCTAGCAAGGAAGAGAAACCTAAAGTCAAACAGGACTCGGACATTACCCGAGAGAGAATCATCCGGCGAGCCGCACTGGAGTTTGAGGACGGGATGTATGCAAACCTTGGCATCGGTATCCCTATGCTGGCCAGCAATTACATAAGCCCTGAAATCATCGTCCACTTGCAGAGCGAGAATGGAATTTTAGGACTGggtcCCTATCCAACAGAGAGTGAAGTGGATCCTGATTTAATCAATGCTGGTAAGGAGACGGTAACAGTTTATCCAGGAGCTGCCTATTTCTCCAGCGATGAATCCTTTGCCATGATTAGAGGggGTCACATTGACCTGACCATGCTTGGAGCAATGCAAGTTTCTAAGTATGGAGATCTGGCCAACTGGATGATTCCAGGTAAAATGGTGAAGGGCATGGGCGGTGCAATGGACCTGGTGTCTAGTGATGCCACAAAAGTAGTTGTCACTATGGAACATTCTGCCAAGggTGGGAAACATAAAATCTTAGAGAAGTGCACACTTCCCCTGACTGGAAAACAGTGTGTTGACCGTATAATCACCGAAAAGGCGGTGTTTGATGTCGATAAGAACAAGGGTTTAACTCTCGTTGAGATTTGGGAAGGACTGACACCAGATGACATTAAAGCATGCACTGGGACGGAGTTTGAGGTGTCAAAAGACTTACGACCGATGCAGCAGATATGAGATAATACTGAGGATTTATATTGATGGCGCTCCGCTGGAAAACTGGGACTGGTCCAGAGCAAGAAAGAGGACTTGACTGCTTCCTTTATaacaaatgtttgcttttttggaTGTTTCATAAAGGCAGAAttcattgttaaataaatgcacaactGTTCTCACCATGTTAATTACAACTTGCTCGAAAGTAGGACATAGTAACTCTCCAAGAGTGGAAAACATCACCTTTTAAG

Function

symbol description
oxct1b Predicted to enable 3-oxoacid CoA-transferase activity. Predicted to be involved in cellular ketone body metabolic process. Predicted to act upstream of or within ketone body catabolic process. Predicted to be active in mitochondrion. Is expressed in liver and yolk syncytial layer. Orthologous to human OXCT1 (3-oxoacid CoA-transferase 1).

NR:

description
PREDICTED: succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial-like

GO:

id name namespace
GO:0046952 ketone body catabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008260 3-oxoacid CoA-transferase activity molecular_function

KEGG:

id description
K01027 OXCT; 3-oxoacid CoA-transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221710.1 True 1913 mRNA 0.44 17 5308926 5314409

Neighbor

gene id symbol gene type direction distance location
LOC122326646 gadd45gb.1,LOC107591738,LOC107589289,LOC107706448,LOC107708506,LOC107681111 coding upstream 17896 5289647 ~ 5291030 (+)
efna5a efna5a,LOC107706503,LOC107589251,LOC107681184,LOC107703575,LOC107708530,LOC106563326,LOC105015058 coding upstream 56013 5203464 ~ 5252913 (+)
zgc:103482 zgc:103482,LOC107708531,LOC107703577,LOC107706502,LOC107681060 coding upstream 167425 5139161 ~ 5141501 (+)
si:dkey-30k6.5 LOC107681183,LOC107706501,LOC107708532,LOC107703579,LOC107591696 coding upstream 170098 5133745 ~ 5138828 (+)
LOC122326134 hspb11,LOC107591699,LOC107703580,LOC107681190,LOC107706446,LOC107589249,LOC107708534 coding upstream 175620 5132205 ~ 5133306 (+)
c7b c7,c7b,LOC107681132,LOC107706508,LOC107703570 coding downstream 604 5315013 ~ 5322097 (+)
htr1ab htr1ab,htr1a,LOC107589255,LOC107703504,LOC107681135,LOC107706510,LOC107708525,LOC107591737 coding downstream 23947 5338356 ~ 5340138 (+)
ndr1 ndr1,LOC107706449,LOC107681142,LOC107589292,LOC107708517,LOC107591687 coding downstream 47549 5361958 ~ 5365041 (+)
rictorb rictor,rictorb,LOC107681152,LOC107589259,LOC107703559 coding downstream 128702 5443111 ~ 5466387 (+)
lifrb NA coding downstream 152105 5466514 ~ 5474409 (+)
G143937 NA non-coding upstream 157037 5151557 ~ 5151889 (+)
LOC122326722 NA non-coding upstream 194642 5111482 ~ 5114284 (+)
G143926 slc26a1,LOC107589247,LOC107706495,LOC107681097 non-coding upstream 202700 5103857 ~ 5106226 (+)
LOC122326250 NA non-coding upstream 233323 5070327 ~ 5075603 (+)
LOC122326855 NA non-coding upstream 241126 5034930 ~ 5067800 (+)
G144007 NA non-coding downstream 12821 5327230 ~ 5328405 (+)
G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding downstream 51783 5366192 ~ 5374922 (+)
G144081 LOC107708509 non-coding downstream 223791 5538200 ~ 5539464 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding downstream 317632 5632041 ~ 5632851 (+)
G144129 NA non-coding downstream 370419 5684828 ~ 5685097 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 280880 4947584 ~ 5028046 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other upstream 397110 4899490 ~ 4911816 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other upstream 563660 4730603 ~ 4745266 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other upstream 599485 4705157 ~ 4709441 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 784746 4511926 ~ 4524180 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 186694 5501103 ~ 5506433 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other downstream 187624 5502033 ~ 5517936 (+)
sdhaf1 sdhaf1 other downstream 192137 5506546 ~ 5508393 (+)
G144077 NA other downstream 194256 5508665 ~ 5510746 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other downstream 418031 5732440 ~ 5735137 (+)

Expression


Co-expression Network