LOC122326646 (gadd45gb.1,LOC107591738,LOC107589289,LOC107706448,LOC107708506,LOC107681111)


Basic Information

Item Value
gene id LOC122326646
gene name gadd45gb.1,LOC107591738,LOC107589289,LOC107706448,LOC107708506,LOC107681111
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5289647 ~ 5291030 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221714.1
TAAAAGCGGCGAGCTCGCGCCCTTAGAGCACCGATCCTTTCGGATTACACCCAGCTTCAGTTCCGCTATCTGCTCCTTGTGGAATTACTGCCAGCATCGCCATGACTCTTGAGGAGGTCCTCGTCCAGAAGCCCAGCGAGAGAGCTCAGAGCACTGGGAAAGCGCTGGAAGAAGTTTTGGTTTCTGCCAAAGCGAACGACTCCCTCACCATCGGTGTTTACGAGTCTGCCAAAGTTATGAATGTTGACCCAGACAGCGTGTCTTTCTGCGTCCTGGCGATGGATGAGGAGTTTGAGTGCGACATCGCTCTCCAAATCCACTTCACTCTCATCCAAGCCTTCTGTTTCGACAACGACATCAGCATCGTTAGAGTGAATGACATGCAACGTCTCTCTGAGATCGTTGGTGACAATGCTGAACAATTTGAGGATGCGCACTGCGTGCTTATCACGAACCCAGCTGAGGACTCGTGGGAGGATCCAGCTCTGGAGAAGCTTCACCTGTTCTGTGAAGAAAGCCGCAGCTATAACGAGTGGGTTCCTGAGATCACTCTGCCCGAGCGTTGATCTGGAGCTTTTACTCTTCTCTGCTGAGATGCCGTAAACCTTGAGGAATACTCGACTCATCCTTCGAAGCAAGGATGCTGATGTTTCCACATCCCTGGATGCTCCTGAGGAGGCTGAACCGTCCAGGCAGCGCGAGGCAGGCCCGAGTGGCCCTCGCGGTTCTACGTCGTTCCTCGTCCCGTCCATACCAAGATGATCCTCATTCTTTATGTGAACGAGGTCAGGTATGCCACGAGAGCGACACAATGGCCCTCATTCTTTGTGCGGATGAGGTTTGGAGAGGAAGGAGAAGCGAGTTTTGCCTCTGTTCCACAGAGCAAATATCGCATGCGTTGGACACGCAGAGGACGCGGCGGAGCGTCGAAGCAACGTTTTTAAAAGTGGACTTTTAACATCTGggacctttttaaaaatgtaattgccgCACGATATAACGTACCTTATTGTCGGCAATGTGCTTTCCACTTTCCAGAATTGTCTTATTCTCTAAAGGTTTCACTTTAGAAATATTCATGTGAcataaaaggagaaaaaaaaagaaaaaaaaaactaacttaaacATCTCTAAAGGTTTCACTTTAGAAATATTCATG

Function

symbol description
gadd45gb.1 Predicted to be involved in regulation of cell cycle. Predicted to be active in cytoplasm and nucleus. Is expressed in nervous system; neural tube; and optic vesicle. Orthologous to human GADD45G (growth arrest and DNA damage inducible gamma).

NR:

description
PREDICTED: growth arrest and DNA damage-inducible protein GADD45 gamma-like

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006950 response to stress biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221714.1 True 1159 mRNA 0.49 3 5289647 5291030

Neighbor

gene id symbol gene type direction distance location
efna5a efna5a,LOC107706503,LOC107589251,LOC107681184,LOC107703575,LOC107708530,LOC106563326,LOC105015058 coding upstream 36734 5203464 ~ 5252913 (+)
zgc:103482 zgc:103482,LOC107708531,LOC107703577,LOC107706502,LOC107681060 coding upstream 148146 5139161 ~ 5141501 (+)
si:dkey-30k6.5 LOC107681183,LOC107706501,LOC107708532,LOC107703579,LOC107591696 coding upstream 150819 5133745 ~ 5138828 (+)
LOC122326134 hspb11,LOC107591699,LOC107703580,LOC107681190,LOC107706446,LOC107589249,LOC107708534 coding upstream 156341 5132205 ~ 5133306 (+)
pde6b pde6b,LOC107706500,LOC107681163,LOC107708533,LOC108436964,LOC107703582 coding upstream 161421 5119094 ~ 5128226 (+)
LOC122326643 oxct1b,LOC107703571,LOC107591691,LOC107681133,LOC108439614,LOC107711896 coding downstream 17896 5308926 ~ 5314409 (+)
c7b c7,c7b,LOC107681132,LOC107706508,LOC107703570 coding downstream 23983 5315013 ~ 5322097 (+)
htr1ab htr1ab,htr1a,LOC107589255,LOC107703504,LOC107681135,LOC107706510,LOC107708525,LOC107591737 coding downstream 47326 5338356 ~ 5340138 (+)
ndr1 ndr1,LOC107706449,LOC107681142,LOC107589292,LOC107708517,LOC107591687 coding downstream 70928 5361958 ~ 5365041 (+)
rictorb rictor,rictorb,LOC107681152,LOC107589259,LOC107703559 coding downstream 152081 5443111 ~ 5466387 (+)
G143937 NA non-coding upstream 137758 5151557 ~ 5151889 (+)
LOC122326722 NA non-coding upstream 175363 5111482 ~ 5114284 (+)
G143926 slc26a1,LOC107589247,LOC107706495,LOC107681097 non-coding upstream 183421 5103857 ~ 5106226 (+)
LOC122326250 NA non-coding upstream 214044 5070327 ~ 5075603 (+)
LOC122326855 NA non-coding upstream 221847 5034930 ~ 5067800 (+)
G144007 NA non-coding downstream 36200 5327230 ~ 5328405 (+)
G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding downstream 75162 5366192 ~ 5374922 (+)
G144081 LOC107708509 non-coding downstream 247170 5538200 ~ 5539464 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding downstream 341011 5632041 ~ 5632851 (+)
G144129 NA non-coding downstream 393798 5684828 ~ 5685097 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 261601 4947584 ~ 5028046 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other upstream 377831 4899490 ~ 4911816 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other upstream 544381 4730603 ~ 4745266 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other upstream 580206 4705157 ~ 4709441 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 765467 4511926 ~ 4524180 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 210073 5501103 ~ 5506433 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other downstream 211003 5502033 ~ 5517936 (+)
sdhaf1 sdhaf1 other downstream 215516 5506546 ~ 5508393 (+)
G144077 NA other downstream 217635 5508665 ~ 5510746 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other downstream 441410 5732440 ~ 5735137 (+)

Expression


Co-expression Network