LOC122326660


Basic Information

Item Value
gene id LOC122326660
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4106787 ~ 4206681 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221736.1
TTGTGGGAGCTGTAGGAGGGGAAGATTTAGACACACATACTCTCTGTCTTTGCTGTTTGTGTTACAAAAAGCAGGTCTATACTGCATCTTTCAGCAAAGATACACACTTTGGAGAAAAGGCagtttctctctccctctgtttagttttgctctctttctcacatTCGCAGCTTGTTATACCTTGGAGAAAATGTCATGGTCTTACTTGCACTCAATCTTTCTGTTAACTTGCCAGAATGTAACAGATGTAACAGAACATACAGTTTTCCTTAACATTAAGTTGGGCTGCTGTCAACAGGGCCGCAGTACGAGACGAAAAGAAGACAAGAAGACATCAAATAAAAAGGAGATGCGAGGTCAAAGAATTGACGTAGAGCAGCTTCTCAGGCAGTCACAGACTGAACTGCTGTGGATCCAGCGACAGCTGTCAATCATAGCAGCAGGAGATGCCAATCGTGCACGGGCCCAAAAGAAGCTGAAGCAGGAGGCCCAGCCGTTGCACCTGGCCTCTCACGCAGCCCACCATGTGAACCGCTGCCACCTCTTAGAGGAAAAGAACAGAGCTCTTAAACTTGAGCTAGCCACTCTCAGACAGCATAAACAGCAGCACAGATCTCTGGAGTCAGAGGTCAACGAGCGGAGGAAGAGGTGTCAGATCCTTGAGAGAGAAGTGAAGAATAAGGCATTAGAATGTAAGACTTTGAAGAATGAGCTTCAGGATGCTTTGCTGGAGAGAAAACGGCTCAATCGTGAGCTGCTTAGTCACATCCTGAAGGCCACACAGTACGAGAAGCCGGCGTGCCACGGTTTGGCAGTCTCTTTCCGAATAATCCACAGGCTGCTCCCCTCCTCTAACAGCAAAAAGGGCCATCTGTCACAACCCCAGACAAGCGTCTGAGATAAAATGTCTTCTGTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221736.1 True 919 mRNA 0.47 6 4106787 4206681

Neighbor

gene id symbol gene type direction distance location
stx2a LOC107708345,LOC107565383,LOC107661188,LOC107566207,LOC107722811,LOC107684913 coding upstream 635 4102906 ~ 4106152 (+)
vav2 vav2,LOC107661185,LOC107722824,LOC107684912 coding upstream 32368 3947066 ~ 4074419 (+)
brd3a LOC107708359,LOC107686882,LOC107573464,LOC107741956 coding upstream 160980 3937378 ~ 3945807 (+)
rxraa rxraa,rxra,LOC107708356,LOC107679846,LOC107556936,LOC107686886,LOC107573462 coding upstream 188080 3786759 ~ 3918707 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 coding upstream 358380 3737381 ~ 3748407 (+)
rimbp2a si:ch73-287m6.1,LOC107565381,LOC107708362 coding downstream 980 4207661 ~ 4228492 (+)
LOC122326554 LOC107708345,LOC107565383,LOC107661188,LOC107566207,LOC107722811,LOC107684913 coding downstream 76515 4283196 ~ 4286425 (+)
LOC122326555 LOC107565381,LOC107708362 coding downstream 80522 4287203 ~ 4331354 (+)
LOC122326553 si:dkey-1d7.3,LOC107565380,LOC107566205,LOC107722807 coding downstream 132291 4338972 ~ 4359303 (+)
smpd4 smpd4,LOC107706469,LOC107700779,LOC107685262,LOC107722816 coding downstream 303689 4510370 ~ 4520829 (+)
G143717 NA non-coding upstream 20261 4075527 ~ 4086526 (+)
LOC122326258 NA non-coding upstream 185068 3919733 ~ 3921719 (+)
G143664 NA non-coding upstream 303018 3803458 ~ 3803769 (+)
LOC122326834 NA non-coding upstream 337231 3763332 ~ 3769556 (+)
G143656 NA non-coding upstream 354589 3751599 ~ 3752198 (+)
G143745 NA non-coding downstream 344740 4551421 ~ 4552468 (+)
LOC122326582 NA non-coding downstream 356653 4563334 ~ 4578128 (+)
G143751 NA non-coding downstream 382045 4588726 ~ 4589152 (+)
G143826 NA non-coding downstream 544536 4751217 ~ 4751510 (+)
G143827 NA non-coding downstream 545226 4751907 ~ 4752259 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other upstream 402390 3701429 ~ 3704397 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other upstream 786774 3297990 ~ 3320013 (+)
gnrh2 LOC107595723 other upstream 1276431 2829114 ~ 2830356 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 1869592 2233659 ~ 2237195 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other upstream 2050108 2030104 ~ 2056679 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other downstream 305245 4511926 ~ 4524180 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other downstream 498476 4705157 ~ 4709441 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other downstream 523922 4730603 ~ 4745266 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other downstream 692809 4899490 ~ 4911816 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other downstream 740903 4947584 ~ 5028046 (+)

Expression


Co-expression Network