snrpd3l (snrpd3,smd3,LOC105014836,LOC106563120)


Basic Information

Item Value
gene id snrpd3l
gene name snrpd3,smd3,LOC105014836,LOC106563120
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1807195 ~ 1808839 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221741.1
TCAGGAAAGGGCGGGGCTTCTGCTTTCAGTTGCATTGTGGGAGCGGGAAAACGCCGCAAATACTCACGTTGCTCAGCCGTGAGGTCTTCTACGGAGTTGTTACAGATACAagGTTAAAACATGTCTATTGGTGTTCCCATCAAAGTCCTGCATGAAGCAGAGGGTCACATTGTGACCTGCGAGACAAACACGGGTGAGGTGTACAGAGGCAAACTGATTGAAGCAGAGGATAACATGAACTGCCAGATGTCCAACATTACAGTGACCTATCGAGATGGCCGAGTGTCCCAGCTGGAGCAGGTGTACATTCGTGGCAGCAAAATCCGCTTCCTCATTCTGCCTGACATGTTGAAAAACGCCCCCATGTTGAAgagcatgaaaaacaaaaaccaaggTGCAGGAGCTGGAAGAGGCAAAGCTGCTATTCTCAAGGCTCAAGTCGCAGCGAGGGGCCGAGGTCGAGGAGGGCCAGGAGGAAGGGGAAATATTTTCCAGAAAAGACGATAATGTGAATCCGGTTTCAATCAGTCATTTTGTAcaggtggttttttttttgaagaagaagaaattgtGCTTTTTCGTTTTGGTAAAATTGGTGATCTTGTAGTTGTTAATTTTGCAGCAGTTATTTTCACTTTTCTCATATAATAAAGTTGTCTGTTTTATAAATGA

Function

symbol description
snrpd3 Predicted to act upstream of or within spliceosomal snRNP assembly. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of spliceosomal complex. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human SNRPD3 (small nuclear ribonucleoprotein D3 polypeptide).
smd3 Predicted to enable RNA binding activity. Involved in several processes, including lymph gland development; nervous system development; and pole plasm oskar mRNA localization. Located in pole plasm. Part of catalytic step 2 spliceosome and precatalytic spliceosome. Is expressed in adult brain cell body rind and organism. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human SNRPD3 (small nuclear ribonucleoprotein D3 polypeptide).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component

KEGG:

id description
K11088 SNRPD3, SMD3; small nuclear ribonucleoprotein D3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221741.1 True 672 mRNA 0.45 4 1807195 1808839

Neighbor

gene id symbol gene type direction distance location
adora2ab adora2ab,LOC107736926,LOC107600912,LOC107675636,LOC107584529,LOC107739748,LOC107661642 coding upstream 2283 1796942 ~ 1804912 (+)
specc1lb specc1lb,LOC107662600,LOC107600876,LOC107675626,LOC107736902,LOC107584528 coding upstream 12553 1771331 ~ 1794642 (+)
sptan1 sptan1,spna2,LOC107675629 coding upstream 45490 1733733 ~ 1761705 (+)
odf2a LOC107600900,LOC107739747,LOC107736864,LOC107675630,LOC107584531 coding upstream 75522 1722853 ~ 1731673 (+)
kiaa1328 kiaa1328,LOC107600915,LOC107661705 coding upstream 529582 1258176 ~ 1277613 (+)
LOC122326489 camkk2,LOC107739694,LOC107736868,LOC108437385 coding downstream 568 1809407 ~ 1830152 (+)
zgc:113162 LOC107692271,LOC107584524,LOC107661621,LOC107736869 coding downstream 21845 1830684 ~ 1849485 (+)
LOC122326700 NA coding downstream 140897 1949736 ~ 1953226 (+)
slc31a2 LOC107661547 coding downstream 186948 1995787 ~ 1999047 (+)
LOC122326937 NA coding downstream 471742 2280581 ~ 2287288 (+)
G143144 NA non-coding upstream 42100 1764761 ~ 1765095 (+)
G143140 NA non-coding upstream 43452 1763476 ~ 1763743 (+)
G143139 wdr34,LOC107736865,LOC107584613 non-coding upstream 44358 1762382 ~ 1762837 (+)
G142977 LOC107662880 non-coding upstream 560386 1215590 ~ 1246809 (+)
G143149 NA non-coding downstream 30493 1839332 ~ 1963020 (+)
G143153 NA non-coding downstream 64922 1873761 ~ 1944503 (+)
G143155 NA non-coding downstream 68832 1877671 ~ 1883530 (+)
LOC122326018 NA non-coding downstream 173084 1981923 ~ 1984090 (+)
G143290 NA non-coding downstream 263335 2072174 ~ 2072661 (+)
LOC122326311 NA other upstream 578140 1227998 ~ 1229055 (+)
glrx glrx,LOC107661879,LOC107665229 other upstream 651053 1153104 ~ 1156142 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 751270 1050838 ~ 1055925 (+)
alpk2 LOC107600938,LOC107662700 other upstream 1001089 735722 ~ 806106 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other downstream 221265 2030104 ~ 2056679 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 424820 2233659 ~ 2237195 (+)
gnrh2 LOC107595723 other downstream 1020275 2829114 ~ 2830356 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 1489151 3297990 ~ 3320013 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 1892590 3701429 ~ 3704397 (+)

Expression


Co-expression Network