LOC122326784 (ube2g1b,ub2g1,LOC107686891,LOC107595690,LOC106579958,LOC103152401,LOC106931442)


Basic Information

Item Value
gene id LOC122326784
gene name ube2g1b,ub2g1,LOC107686891,LOC107595690,LOC106579958,LOC103152401,LOC106931442
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3326500 ~ 3329805 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221929.1
TGCCCACAACTAGTGTAGTAGGCAGCTACCTAGTGACACACAGCCTTGAGGTCAGTGCCAGTATCACATGTATCGCTTCTCGGCGCATGTGAAGTAGATTTCAAATACAAAGTGCCGAAGTGCTGCGCGTCGAGCAACTTTGATTGCCAACATTGATTTCTCCGACTTTATTTCTTCCCGTTTTCGTTGgagacattatttattttgttaacgttagttaaaataaaatgactgagcAATCGGCCCTGCTTCTGCGAAAACAGCTAGCAGAGCTCAACAAAAACCCAGTGGAAGGTTTTTCTGCTGGTCtgattgatgatgatgatatctATCAGTGGGAGGTTGTCGTGATCGGCCCTCAAGACACACTGTTTGAAGGTGGGTTTTTTAAGGCGCATCTCATTTTCCCTCATGATTACCCGCTCCGGCCTCCCAAGATGAAGTTTATTACGGAGATTTGGCATCCTAATGTCGCAAAGAACGGGGATGTGTGCATTTCCATCCTACATGAGCCAGGAGAGGACAAATTTGGCTATGAGAAACCCGAGGAGCGTTGGCTGCCCATCCATACCGTAGAGACCATCATGATTAGTGTGATATCCATGTTAGCAGACCCCAATGGTGACTCGCCAGCCAATGTGGACGCGGCTAAAGAGTGGCGAGAGGATCAAGCGGTGAGTTCAAAAGGAAAGTCGCCCGCTGTGTGAGGAAAAGCCAAGAAATGGCATTCGACTAGACGCCCCATCACTGTTTCGTTTGGTACACATCAGTTCCCATCTCCATATCTTGAGGTCAAAGACAGTGTGAGGATTTTGATTTTTAACACCCATGACAAGCTCATATCAGTTTAATAGGTTTCACTGATATGTTGGATCACATTCATGTGAGGCAAAGCATAATCGCCTGTACTGAATTCTAACCACCCCCGGACATGCCAGTTACAAACTTTAATAGGCAATCACCTTTATTTTAGTCACCGGTTATTTGGGTTTGCACCATTTGGGATATCAGAGCAAAGCCACCatagaataataatttttttttttttatttgaatgtgtgAGTTATAGCACGTTTTGTTAATGTCAATTACCCTCCACCCTATAGTGtgtctgaattatttattatcttaattatgatgAAATGTACTGCATGACACTTGTGTTTTGACTCGCTTTTTTTATCTGCCACTGAGCCATCGATTTTGAACAAAGTCTTTTATGCAATTCTGGCGTGTTTTGTGCGTTTATGGTACTAGTAGAGGCTGATGGTCAGAATCAATGCTGATTTCCCTTCTCACTGACGTGTCGGACAGCCCTGTTCccttgaaaaaaacaacaacaaaacaataccGCAGATGTCTCTCAGAGGGCCGTCTCTTTCTCTGCTGCCTTAAGTTGTTCTCCTACCAGAAAGGAAAATTGTATTCAGTGATGTCAAGTCCTTCTCAATGTCTAGTCGGTTTTTGAGCTGGAATCCTCTTTTGGATAAACCAAAAAGTTAGATATTTGCATGAGAGacagagaatattttttgtataaatggtaagctcaaaagctgtattttttgtgtatgtaaataCGATGTATTGTACCATAGCTCTAtcagtcatttgtttgtgacgTCCCC

Function

symbol description
ube2g1b Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination. Orthologous to human UBE2G1 (ubiquitin conjugating enzyme E2 G1).

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 G1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221929.1 True 1628 mRNA 0.42 5 3326500 3329805

Neighbor

gene id symbol gene type direction distance location
LOC122326816 NA coding upstream 32492 3291697 ~ 3294008 (+)
LOC122326343 LOC107692324,LOC107595714,LOC107737877,LOC107686912,LOC107736923,LOC107563914 coding upstream 350449 2966166 ~ 2976051 (+)
LOC122326342 NA coding upstream 361824 2957186 ~ 2964676 (+)
LOC122326345 NA coding upstream 369920 2954779 ~ 2956580 (+)
trnaa-ugc_120 NA coding upstream 379577 2946852 ~ 2946923 (+)
LOC122326952 NA coding downstream 7180 3336985 ~ 3338965 (+)
LOC122326141 aqp3b,LOC107686895,LOC107737882,LOC107692335,LOC107707134,LOC107556931,LOC107595728 coding downstream 146178 3475983 ~ 3480494 (+)
LOC122326336 vps29,LOC107595689 coding downstream 164179 3493984 ~ 3497228 (+)
gpn3 gpn3,LOC107686892,LOC107692302,LOC106563155 coding downstream 169840 3499645 ~ 3502742 (+)
arpc3 arpc3,LOC107737855,LOC107707141 coding downstream 173417 3503222 ~ 3505587 (+)
G143578 NA non-coding upstream 11027 3315177 ~ 3315473 (+)
G143509 NA non-coding upstream 388883 2930262 ~ 2937617 (+)
G143491 NA non-coding upstream 463483 2862772 ~ 2863017 (+)
G143465 NA non-coding upstream 525152 2800730 ~ 2801348 (+)
G143385 NA non-coding upstream 783193 2487403 ~ 2543307 (+)
LOC122326852 NA non-coding downstream 6456 3336261 ~ 3336689 (+)
G143590 NA non-coding downstream 158706 3488511 ~ 3492587 (+)
G143638 NA non-coding downstream 279114 3608919 ~ 3610050 (+)
G143656 NA non-coding downstream 421794 3751599 ~ 3752198 (+)
LOC122326834 NA non-coding downstream 433527 3763332 ~ 3769556 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other upstream 6487 3297990 ~ 3320013 (+)
gnrh2 LOC107595723 other upstream 496144 2829114 ~ 2830356 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 1089305 2233659 ~ 2237195 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other upstream 1269821 2030104 ~ 2056679 (+)
LOC122326311 NA other upstream 2097445 1227998 ~ 1229055 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 371624 3701429 ~ 3704397 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other downstream 776996 4106801 ~ 4213772 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other downstream 802631 4132436 ~ 4386212 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other downstream 1182121 4511926 ~ 4524180 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other downstream 1375352 4705157 ~ 4709441 (+)

Expression


Co-expression Network