rx3 (rax,rx3,LOC107739660,LOC107719081,LOC107584557)


Basic Information

Item Value
gene id rx3
gene name rax,rx3,LOC107739660,LOC107719081,LOC107584557
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 752820 ~ 755652 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221955.1
GGAACACTACTGGAGAAAGTCGCTTCAGCTGGGACAGCCTGGACTATTGGAAAGAGACGGACGGAATCTTtagtgctttcttttttttgtcctgaAGCCAGTCGTTCGATGAGGCTCGTTGGATCTCGGTCCCAAGACATGGAAGAGCATCTCTCCCCATCCGCGCGCTCGGCTCGCAGTCCCGGGTCCCAAACGAGGATCCACAGCATTGAATCCATATTAGGATTTAAAGGAGAGAACCTCTTCCACCCGGCGTTTTCTTACGGATCTGGGAAGACGGTCAAAGACGCCGAGCATTTGTCTTCCCCCAAAAAGGATTCCAGTAACTCCAAAAACTTTGATGGTGTCTGCAGGTCCGCCGTCATGGTCAGTCCGGATCTGCCGGACGATGCCGGCAAGTTGTCGGACGATGAAAATCCCAAGAAAAAGCACCGGCGAAACCGGACCACGTTCACCACCTTCCAGCTGCACGAGCTCGAGAGAGCGTTTGAGAAGTCGCACTATCCTGACGTGTACAGCAGAGAGGAGCTGGCGCTCAAGGTCAACCTGCCGGAGGTCCGCGTGCAGGTTTGGTTCCAAAACCGGCGTGCGAAGTGGCGGCGTCAGGAGAAGCTGGAGGTGAGCTCCATCAAGCTGCAGGAGTCCTCCCTGCTTTCCATCCCCAGATCGGGGCCGCTGTCCCTGCCGTTAGAGCCCTGGCTTACCGGACCCATCACCTCCTCCGGCTCTCCCCTGCAGTCTCTGCCCAGCTTCATCACCCCTCAGCAGGGAGTACCGGCCAGCTACACCCCTCCGCAGTTCCTCAGCTCATCCGCGCTCAACCACCCCCTGCCCCACATAGGAGCGGTGTGCCCCCCTCCGCCTGTGTATCAGTGCTCGGGCTTTATGGATAAATTTACACTAGAAGAAGCAGACCCGCGAAACACGAGCATCGCCTCGCTAAGAATGAAAGCGAAGGAACACATCCAGTCTATAGGGAAGACGTGGTAGGCCCAGGAGGACTCGTTTACCTTTCTAAATCAGACTCTGTTTGAAGAAAAGCGGTCCAGAAAACTCCAAGAGTTGTTCGCTGCGGGTGACAGGCTTTGTGAAACAAATTCACTGTATATTACTATCTTTTTCGTCCGTTCAATAAAGTATCCTCGCTAATTCAAACACTCCACCAGACCTAATACAACGCTTTTAcggcaaaaaaacatttaaatcatttaaaaagcgaaataaaaagtttttgtgtacgtgtgtgtactgTT

Function

symbol description
rx3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ development and cell fate specification. Predicted to be located in nucleus. Is expressed in several structures, including forebrain; neural keel; neural plate; presumptive neural plate; and retina. Human ortholog(s) of this gene implicated in isolated microphthalmia 3. Orthologous to human RAX (retina and anterior neural fold homeobox).
rax Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in isolated microphthalmia 3.

NR:

description
retinal homeobox protein Rx

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001755 neural crest cell migration biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0021984 adenohypophysis development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09332 RAX, RX; retina and anterior neural fold homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221955.1 True 1253 mRNA 0.53 3 752820 755652

Neighbor

gene id symbol gene type direction distance location
cplx4a cplx4,cplx4a,LOC107662952,LOC107719084,LOC107739741,LOC107701934 coding upstream 2176 746242 ~ 750644 (+)
lman1 lman1,LOC107662211,LOC107739740,LOC107701961,LOC107719069 coding upstream 9874 730792 ~ 742946 (+)
ccbe1 ccbe1,LOC107662219,LOC107701959,LOC107584559,LOC107719070,LOC107600894,LOC107739739 coding upstream 29761 676866 ~ 723059 (+)
LOC122326268 herc1,LOC107701925,LOC108436580 coding upstream 257656 437774 ~ 495164 (+)
mapk10 mapk10,LOC107749009,LOC107662288,LOC108278438,LOC102308224 coding upstream 429060 263512 ~ 323760 (+)
znf532 LOC107662164,LOC107739659,LOC107600940,LOC107584556,LOC107701962,LOC107719066 coding downstream 6994 762646 ~ 779143 (+)
oacyl LOC107600942,LOC107662202,LOC107739742,LOC107719080,LOC107584632 coding downstream 23633 779285 ~ 786532 (+)
prlra LOC107662152,LOC107739665,LOC107600937,LOC107665241,LOC107584552 coding downstream 122577 878229 ~ 901350 (+)
agxt2 agxt2,LOC107662137,LOC107719064,LOC107739667,LOC102783298 coding downstream 146021 901673 ~ 915039 (+)
LOC122326806 LOC107719062 coding downstream 170706 926358 ~ 939559 (+)
G142807 NA non-coding upstream 26228 726258 ~ 726592 (+)
G142729 LOC107749016,LOC107565393,LOC107701931,LOC107719087,LOC107584674,LOC107662962 non-coding upstream 318698 431624 ~ 434122 (+)
G142672 NA non-coding upstream 549645 202787 ~ 203175 (+)
G142658 NA non-coding upstream 556618 182416 ~ 196202 (+)
LOC122326263 NA non-coding upstream 572771 172944 ~ 180049 (+)
G142832 NA non-coding downstream 3623 759275 ~ 812057 (+)
G142866 NA non-coding downstream 160969 916621 ~ 916963 (+)
LOC122326171 NA non-coding downstream 292726 1048378 ~ 1081301 (+)
G142941 NA non-coding downstream 316616 1072268 ~ 1074041 (+)
G142933 NA non-coding downstream 326515 1082167 ~ 1083273 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other downstream 295186 1050838 ~ 1055925 (+)
glrx glrx,LOC107661879,LOC107665229 other downstream 397452 1153104 ~ 1156142 (+)
LOC122326311 NA other downstream 472346 1227998 ~ 1229055 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other downstream 1274452 2030104 ~ 2056679 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 1478007 2233659 ~ 2237195 (+)

Expression


Co-expression Network