zgc:103482 (zgc:103482,LOC107708531,LOC107703577,LOC107706502,LOC107681060)


Basic Information

Item Value
gene id zgc:103482
gene name zgc:103482,LOC107708531,LOC107703577,LOC107706502,LOC107681060
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5139161 ~ 5141501 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222027.1
TATGAACCTGAGTTCAATTAACTGAACATCACGTCTGACTACTGCTTTAATTTGTGCTCACAAGCTAGGTTTCGATCTTTGGGCACAGTTTAAGGCCTTCACTTTTTCTCTTTGGGAGATAAACAGAGTTTAGTTTGGCTGTATTTGTAGTTCTTCCATGACAGCAACTCGATTGTTTGATTTCCATCGCAATAATCGATCAAAATGAAGGAGCTAGTAGAGGAGATGCCTGACGAGGGCTACGGGTGCGCCGTTGCTAATCGTTTCGGCCAGCTGCTGGACGACGAATCCGACCCTTTCGACATCTTATACGCGGCGGGGATTGAAAAGAAaccgaagaagaagaaagacgaGCCAAAGAAAACCTCAACCACGACTAAATCTGGAAAGAAAGAGTCTCAGAGGGACAGGAAAATCGTTCTTCCAGCAGTCGGAGGTGGACAAGGCCAAGTCCGTCTTGCGCGCGGAGAAGTTGAGGAGCGAATAGAGAGACGCGTGACCTTTGAGCGCAAGTTCAGCGATGCTGAAACCCCTCTCAGTTTCTCCGTCGAGAGGCCTGTGGATGTGCTGGACAGGCCTGTCAGAGGAAGAGGTACAGGAAGAGGACGAGGAGCCCGAGGCCCAGGATATCCGAGATCCAGTGATGGATTTGACCAGAGGGGAAAGAGAGAGTTTGAGAGACACAGTGGCAGTGACCGAACGAGTGTCCGTTCAGAAGAGAAGCGCAGCGGCAGTGGATCTCGCAACTGGGGCTCGATGAGAGACCATATGAGTGAAATTGAAGAGGGGTCACCTAGCGAAGAGGTCGTTGAAAACGAGGAGACCCAAGAGGCGGTCGAGACTGATGGAGAAACCAGACCATCTGAGACAGAGGAAGTGATTGAGGTTGCCCTAGAGATGACACTGGATGAGTGGAAAGCCCTGCAGGAGCAAAGCAGGCCAAAGGTAGAGCTGAATATCCGTAAAGCAGATACCTCTGTGCCGTCGAAGGCCGTGGTCATCCATAAGTCCAAATTCCTGGAGAAACATCACAATGGCTTGGATGAGGAGGATGTGGTTTTCCGCCGCCCAGCCAATGACATCACCCGTCAGCTGGAGATCAACTTTGGCAGCCTGGCTCGGCCTTCTCGTGGTGGGAGAGGAGGACGAGGCGGTCGCGGCCGTGGGGCTCCATCCATGCCATCCCAAAGATCTCCTCAAAAACTCGAATCCGCTCCAAATCCAGATGATCCGGAAGATTTCCCTGCACTGGCCTAGAGCTCCTCTGGAGGTAGAGAGCGAGGATCAAATGTTCTGCAAACCATGTTGGTAACTGAGTTGGGCGATGtgcacttaaaatgaaaaataaagaatgcATAAAGTTG

Function

symbol description
zgc:103482 Predicted to enable RNA binding activity. Predicted to be involved in positive regulation of RNA splicing and positive regulation of translational initiation. Predicted to be active in cytoplasm and nucleus. Is expressed in primordial germ cell.

NR:

description
PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like

GO: NA

KEGG:

id description
K19019 HABP4; intracellular hyaluronan-binding protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222027.1 True 1364 mRNA 0.51 8 5139161 5141501

Neighbor

gene id symbol gene type direction distance location
si:dkey-30k6.5 LOC107681183,LOC107706501,LOC107708532,LOC107703579,LOC107591696 coding upstream 333 5133745 ~ 5138828 (+)
LOC122326134 hspb11,LOC107591699,LOC107703580,LOC107681190,LOC107706446,LOC107589249,LOC107708534 coding upstream 5855 5132205 ~ 5133306 (+)
pde6b pde6b,LOC107706500,LOC107681163,LOC107708533,LOC108436964,LOC107703582 coding upstream 10935 5119094 ~ 5128226 (+)
si:dkey-247m21.3 LOC107706496,LOC107681108,LOC107589286,LOC107591744,LOC107703507,LOC107708508 coding upstream 41964 5076556 ~ 5097197 (+)
ccdc80l2 ccdc80l2,LOC107706489,LOC107589242,LOC107681168,LOC107750362 coding upstream 240576 4894027 ~ 4898585 (+)
efna5a efna5a,LOC107706503,LOC107589251,LOC107681184,LOC107703575,LOC107708530,LOC106563326,LOC105015058 coding downstream 61963 5203464 ~ 5252913 (+)
LOC122326646 gadd45gb.1,LOC107591738,LOC107589289,LOC107706448,LOC107708506,LOC107681111 coding downstream 148146 5289647 ~ 5291030 (+)
LOC122326643 oxct1b,LOC107703571,LOC107591691,LOC107681133,LOC108439614,LOC107711896 coding downstream 167425 5308926 ~ 5314409 (+)
c7b c7,c7b,LOC107681132,LOC107706508,LOC107703570 coding downstream 173512 5315013 ~ 5322097 (+)
htr1ab htr1ab,htr1a,LOC107589255,LOC107703504,LOC107681135,LOC107706510,LOC107708525,LOC107591737 coding downstream 196855 5338356 ~ 5340138 (+)
LOC122326722 NA non-coding upstream 24877 5111482 ~ 5114284 (+)
G143926 slc26a1,LOC107589247,LOC107706495,LOC107681097 non-coding upstream 32935 5103857 ~ 5106226 (+)
LOC122326250 NA non-coding upstream 63558 5070327 ~ 5075603 (+)
LOC122326855 NA non-coding upstream 71361 5034930 ~ 5067800 (+)
G143887 NA non-coding upstream 246074 4891138 ~ 4893087 (+)
G143937 NA non-coding downstream 10056 5151557 ~ 5151889 (+)
G144007 NA non-coding downstream 185729 5327230 ~ 5328405 (+)
G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding downstream 224691 5366192 ~ 5374922 (+)
G144081 LOC107708509 non-coding downstream 396699 5538200 ~ 5539464 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding downstream 490540 5632041 ~ 5632851 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 111115 4947584 ~ 5028046 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other upstream 227345 4899490 ~ 4911816 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other upstream 393895 4730603 ~ 4745266 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other upstream 429720 4705157 ~ 4709441 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 614981 4511926 ~ 4524180 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 359602 5501103 ~ 5506433 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other downstream 360532 5502033 ~ 5517936 (+)
sdhaf1 sdhaf1 other downstream 365045 5506546 ~ 5508393 (+)
G144077 NA other downstream 367164 5508665 ~ 5510746 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other downstream 590939 5732440 ~ 5735137 (+)

Expression


Co-expression Network