lman1 (lman1,LOC107662211,LOC107739740,LOC107701961,LOC107719069)


Basic Information

Item Value
gene id lman1
gene name lman1,LOC107662211,LOC107739740,LOC107701961,LOC107719069
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 730792 ~ 742946 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222081.1
CACTCAGACTCAAACATGGCGGTGCCCATAGCCAAGTGCCTGGCAGCTTATGCCTATTTATTACTAATATCTTTAATATCGCCGCACGTTTTCGCTGACAACGCTGCCGGGGAATCGCCGCACCGTCGCTTTGAGTATAAATACAGTTTCAAAGGGCCACATCTGATACAGAGTGATGGAAGAATCCCATTCTGGGTTCATACTGGGAATGCCATTCCTAGTTCGGATCAGGTCCGGATCACCCCTTCTCTGCGGAGCCAGAAGGGTTCGGTATGGACAAAAACCCCTGTAAGTTTTGAACACTGGGAAGCTGAGGTGGCGTTCCGTGTGTCCGGAAGAGGCCGAATGGGAGCAGATGGCTTGgccATATGGTTCACGGCCGGTCAAGGTCTGGAGGGTCCTGTGTACGGGGCCGCTGATCAGTGGAACGGCGTGGGAATATTCTTTGACTCATTTGATAATGATGGAAAGAAAAACAACCCCACTGTCCTGGTGGTGGGTAACAATGGAAAACTTATTTATGACCATCAAAAtgatGGCACAACCCAGTCTCTAGGTACATGTCTTAGAGACTTCAGAAACAAACCTTACCCTGTACGTGCCAAAATCACCTACTACCAGAAAACTTTATCGGTTTTCATCAATAGCGGCTTCACTCCCGATAAAGACGATTATGAGTTCTGCACCAGAGTTGAAAACATGATCATCCCTGAAACTGGTTATTTCGGCATCTCTGCAGCCACTGGAGGACTCGCAGATGACCATGACGTTCTGTCATTTTTGCTATTTAGACTTACAGAGCCTGGGCAGAATCTGCCTCCCCCAGAAAAAGAGATTCCTAAAGAGGAGAAGGACAAGTACCAGGAGGAATTTGAGAATTTCCAACAAGAGCTGGACAAAAGGAAAGAGGAGTTTCAGAAAGAGCACCCTGATGTCCAGGGGCAGCCCATTGAGGACCTGTTTGAAAGCGTTAACGACCGGGAAATCCGTCAGGTGTTTGAGGGGCAGAATCGAATCCACCTGGAAATCAAGCAGCTGAACAGGCAGCTGGCCATGATTCTGGATGAACAACGGCGTTATGTGTCAGTCATCACAGAGGAGATCTCCAAACGCTCCTCACAAGCACAGTCAGGACAGGCTCCCAGTCATGAAATGGAGACCATTATTAATACGCAACAGGAGGTTTTGAGGAATCTTAATGAAATAAGGAACTCATTGTCAGGCTCACTTAAGCAGCTGGCGACAGGACAGCAGCAGGGTAACGCAGGCGGACTCGGATCATATGAGACAGTCCAGCATTTCAATGACATCAAGGAGCATTTGCATGTCGTCAAGAGAAATATCGAACAcataattcagaaaaatgtgAATCCTGCAGAGAAAGTGAAATGTCCTGAACTTCCTCCTTTACCCACCTGCCTCTCTACCACACACTTTTTGATCTTCATCGTCGTTCAATCCCTCATCTTCTTCGGCTACGTTATGTACAAGAGTCAACAGGAAGCTGCAGCTAAGAAGTTTTTTTGATGATTCATAGCTCTTGGTAAACACAGCAAAACATGTAAATTGTCGATTATGTTAATTtccagtttgtttgtttgttatttttttttggttgcaaactgtaaattattataCTTGAAAACTGAAGTATtttgttttgagatttttttttttttttttttttttaattcttgatttttaatttgatcaGATTTGTACAGAGATGAGTGACTGCTCTTTTCCAAGTGTGTGTGGTATTTGCAATGGAAGATTCCTGAATATGATGTAATATATTCTTAAGAGATCTGACGTTATATTTACTGTTCAATGCTGGTCCGGGATTCATTTCATAAACTCAATCGCTGTACCAGTAATGTTCTGAACTGTggtaagaggaaaaaaaaattaatagcaaCAGGATCAAGTGTTTTAATGCTTTCCCTTTGGAAATAACTTTACAATAAGGCGGggggtttttttctgaaagtgttAAAGCTTTATTGTACTGTCAAAAGCAAGAACCTAAAGTTGTGAATGCCTAttttgaatctttaaaaaaagaaacaaaaatgtatttccttctcaaacaatttacataaaaaacaaatcaaaca

Function

symbol description
lman1 Predicted to enable mannose binding activity. Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi membrane; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including axis; hatching gland; head; immature eye; and optic primordium. Human ortholog(s) of this gene implicated in factor V deficiency and factor XIII deficiency. Orthologous to human LMAN1 (lectin, mannose binding 1).

NR:

description
protein ERGIC-53

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K10080 LMAN1, ERGIC53; lectin, mannose-binding 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222081.1 True 2117 mRNA 0.42 13 730792 742946

Neighbor

gene id symbol gene type direction distance location
ccbe1 ccbe1,LOC107662219,LOC107701959,LOC107584559,LOC107719070,LOC107600894,LOC107739739 coding upstream 7733 676866 ~ 723059 (+)
LOC122326268 herc1,LOC107701925,LOC108436580 coding upstream 235628 437774 ~ 495164 (+)
mapk10 mapk10,LOC107749009,LOC107662288,LOC108278438,LOC102308224 coding upstream 407032 263512 ~ 323760 (+)
LOC122326942 NA coding upstream 640555 88162 ~ 90237 (+)
cplx4a cplx4,cplx4a,LOC107662952,LOC107719084,LOC107739741,LOC107701934 coding downstream 3296 746242 ~ 750644 (+)
rx3 rax,rx3,LOC107739660,LOC107719081,LOC107584557 coding downstream 9874 752820 ~ 755652 (+)
znf532 LOC107662164,LOC107739659,LOC107600940,LOC107584556,LOC107701962,LOC107719066 coding downstream 19700 762646 ~ 779143 (+)
oacyl LOC107600942,LOC107662202,LOC107739742,LOC107719080,LOC107584632 coding downstream 36339 779285 ~ 786532 (+)
prlra LOC107662152,LOC107739665,LOC107600937,LOC107665241,LOC107584552 coding downstream 135283 878229 ~ 901350 (+)
G142807 NA non-coding upstream 4200 726258 ~ 726592 (+)
G142729 LOC107749016,LOC107565393,LOC107701931,LOC107719087,LOC107584674,LOC107662962 non-coding upstream 296670 431624 ~ 434122 (+)
G142672 NA non-coding upstream 527617 202787 ~ 203175 (+)
G142658 NA non-coding upstream 534590 182416 ~ 196202 (+)
LOC122326263 NA non-coding upstream 550743 172944 ~ 180049 (+)
G142832 NA non-coding downstream 16329 759275 ~ 812057 (+)
G142866 NA non-coding downstream 173675 916621 ~ 916963 (+)
LOC122326171 NA non-coding downstream 305432 1048378 ~ 1081301 (+)
G142941 NA non-coding downstream 329322 1072268 ~ 1074041 (+)
G142933 NA non-coding downstream 339221 1082167 ~ 1083273 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other downstream 307892 1050838 ~ 1055925 (+)
glrx glrx,LOC107661879,LOC107665229 other downstream 410158 1153104 ~ 1156142 (+)
LOC122326311 NA other downstream 485052 1227998 ~ 1229055 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other downstream 1287158 2030104 ~ 2056679 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 1490713 2233659 ~ 2237195 (+)

Expression


Co-expression Network