LOC122326891 (rpl17,LOC107722835,LOC107700774,LOC107703598)


Basic Information

Item Value
gene id LOC122326891
gene name rpl17,LOC107722835,LOC107700774,LOC107703598
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5922991 ~ 5925662 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222096.1
GCGTTCAACGAAGAAGCGAGAACGGATTTGATCTCCCAGAATGCCCTTCGCTTCCTCTTCCTTTCCGCGGCCTGAGAACATCTCTGAAAATGGTCCGCTACTCGCTCGACCCAGAGAACCCGACTAAATCATGCAAGTCGAGGGGCTCCAACCTCCGTGTTCACTTTAAGAACACCCGTGAGACCGCCCAGGCCATCAAAGGCATGCACATCCGTAAGGCTAACAAGTACCTGAAGGATGTTATCGTGAAGCAACAGTGTGTTCCCTTCCGTCGTTACAATGGTGGTGTTGGCCGCTGCGCTCAGgcTAAGCAGCATAACTGGACTCAGGGACGTTGGCCCAAGAAAAGTGCCGAGTTCCTGCTCCACATGCTGAAGAACGCAGAAAGTAATGCTGAGCTCAAGGGTTTGGATGTGGACTCTCTGGTGATTGAGCACATCCAGGTAAACAAGGCCCCAAAGATGCTTGCGCAGGCGCACGTATCGTGCCACGGACGCATCAACCCTTACATGAGCTCCCCATGCCACATCGAAATGATCCTCACTGAGAAGGAGCAGATCGTTCCCAAACCAGAGGAGGAGGTTTCTCAGAAGAAAAAGGTTTCTCAGAAGAAACTGAAGAAGCAGAAACTTATGGCTCGggagtaaaatgtaaataaagtccAACATTC

Function

symbol description
rpl17 Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to several human genes including RPL17-C18orf32 (RPL17-C18orf32 readthrough).

NR:

description
PREDICTED: 60S ribosomal protein L17-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015934 large ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222096.1 True 670 mRNA 0.51 7 5922991 5925662

Neighbor

gene id symbol gene type direction distance location
pold3 pold3,LOC107706527,LOC107548157,LOC107719019,LOC107573853 coding upstream 210147 5707122 ~ 5712844 (+)
LOC122326977 LOC107703495,LOC107718999,LOC107703444 coding upstream 220581 5701472 ~ 5702410 (+)
or61a1 LOC107703446 coding upstream 224646 5697407 ~ 5698345 (+)
LOC122326976 LOC107719001,LOC107703447,LOC107719002,LOC107573645,LOC107703448 coding upstream 227080 5694961 ~ 5695911 (+)
LOC122326975 or125-1,LOC107719002,LOC107573645,LOC107703448,LOC107719001,LOC107703447 coding upstream 235852 5686198 ~ 5687139 (+)
LOC122326530 LOC107548171,LOC107706536,LOC107703536,LOC107718968,LOC107551635 coding downstream 91762 6017424 ~ 6035864 (+)
LOC122326982 neu3.1,LOC107706460,LOC107718989,LOC107681103,LOC107703553,LOC107548159 coding downstream 115683 6041345 ~ 6043815 (+)
LOC122326403 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 coding downstream 118474 6044136 ~ 6047775 (+)
LOC122326404 neu3.3,LOC107719016,LOC107703493 coding downstream 125186 6050848 ~ 6058624 (+)
gria4b gria4b,LOC107548160,LOC107718985,LOC107706429,LOC108440167,LOC108279362 coding downstream 171814 6097476 ~ 6258252 (+)
LOC122326140 NA non-coding upstream 128387 5792864 ~ 5794604 (+)
G144130 NA non-coding upstream 216156 5705540 ~ 5706835 (+)
G144129 NA non-coding upstream 237894 5684828 ~ 5685097 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding upstream 290140 5632041 ~ 5632851 (+)
G144081 LOC107708509 non-coding upstream 383527 5538200 ~ 5539464 (+)
G144157 nkx6.1,nkx6-1,LOC107703597,LOC107700773,LOC107706438,LOC107722812 non-coding downstream 4107 5929769 ~ 5930885 (+)
G144212 NA non-coding downstream 136762 6062424 ~ 6062680 (+)
G144308 LOC107706534,LOC107548126,LOC107681195,LOC107703486,LOC107719012,LOC107551634 non-coding downstream 536988 6462650 ~ 6462933 (+)
G144317 LOC107703481,LOC107551613 non-coding downstream 572039 6497701 ~ 6537141 (+)
G144329 NA non-coding downstream 606378 6532040 ~ 6533579 (+)
G144152 NA other upstream 73938 5847941 ~ 5849053 (+)
LOC122326980 tnksa,LOC107706493,LOC107681059,LOC107589272,LOC107708542,LOC107703465,LOC103369208 other upstream 123289 5794762 ~ 5799702 (+)
LOC122326918 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 other upstream 181086 5735913 ~ 5741905 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other upstream 187854 5732440 ~ 5735137 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other upstream 405055 5502033 ~ 5517936 (+)
G144330 NA other downstream 608438 6534100 ~ 6535794 (+)
cfap300 si:rp71-1p14.7,cunh11orf70,LOC107731447,LOC107548131,LOC107681129 other downstream 657084 6582746 ~ 6585034 (+)
anapc13 anapc13,anc13,LOC107756075,LOC107693524,LOC107561055 other downstream 1981802 7907464 ~ 7909027 (+)
LOC122326775 si:dkey-183i3.9,LOC107715278,LOC107669329 other downstream 2282141 8207803 ~ 8211125 (+)
si:dkey-183i3.6 NA other downstream 2291313 8216975 ~ 8221572 (+)

Expression


Co-expression Network