smarcb1b (smarcb1b,smarcb1,LOC107661349,LOC107736887)


Basic Information

Item Value
gene id smarcb1b
gene name smarcb1b,smarcb1,LOC107661349,LOC107736887
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2744887 ~ 2752853 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222163.1
ATGCGCGCTGTCGCTCATTGGTTCGCAAAGATGGCGTTGAGTAAAACATTTGGACAAAAACCAATAAAATTTCAACTCGAGCAAGATGGGGATTTTTACATGATAGGTTCAGAGGTTGGAAATTACCTGCGTATGTTCAGAGGCTCTCTGTATAAGCGGTACCCATCACTATGGAGACGTCTCGCATCTGTGGATGAGAGGAAAAAGATTGTAGCTTCATCACACGCCACCAGTGTGACCCTGCTGAAGGCGTCTGAATGTGAGGAGATCTTCGAGGGAAATGATGAGAAGTACAAGGCGGTGTCCATCAGCACAGAGCCTCCAGCATACCTCAGGGAGCAGAAGGCGAAGAGGAGCAGTCAATGGGTGCCCACCCTGCCCAACAGCTCCCACCACCTGGACGCAGTGCCTTGTTCCACCACCATCAACAGAAACCGAATGGGACGTGACAAGAAAAGGACTTTTCCTTTATGTTTCGATGACCACGACCCTGCAGTGATCCACGAAAATGCTTCCCAGGCAGAGGTCCTGGTGCCTATCCGCCTGGACATGGAAATTGATGGGCAGAAGCTCAGAGATGCCTTCACCTGGAATATGAACGAGAAACTCATGACTCCAGAGATGTTTGCTGAGATCCTGTGTGATGACCTGGACTTGAATCCTCTTACCTTCGTCCCTGCCATTGCCTCGGCCATTAGACAGCAGATCGAATCCTACCCTACCGACAGCATTCTGGATGAGCAGACGGACCAAAGAGTCATCATTAAGCTAAACATTCACGTGGGGAACATCTCTCTGGTGGACCAGTTCGAATGGGACATGTCAGAGAAAGAGAACTCGCCAGAAACGTTCGCTTTGAAGCTCTGCTCTGAGCTGGGACTCGGAGGAGAGTTTGTCACCACCATCGCCTACAGCATCCGTGGACAGCTCAGCTGGCATCAGAGGACGTACGCCTTCAGTGAGAACCCATTACCAACAGTGGAGATTGCCATTCGTAACACAGGGGATGCCGATCAGTGGTGCCCTCTGCTGGAGACCCTCACAGATGCAGAGATGGAGAAGAAAATCAGAGACCAGGACAGAAACACAAGGCGTATGCGACGACTTGCTAACACGGCCCCTGCCTGGTAAAGATGGGATGTTACCGATGCTGCCACTCAATAAGCTCACAGTCTCTCGAAGGGCCTCAGGGTTGCTGGAGGCCTTTGCACAGATCCACACAGCTCTAGATAACATTCCTCCAGCCTTCTGACCTCCTCAACCCACACAGCATTACACACTTTCTTAATACCAGGCCTTTAAACTCTGATCTGGCATCAGCCAGGCTTTACAGTGCTCTCGAGGGCTGTTCGGATGTCTTATTAGAATGCCTGTCATTGCCGTTTCTCTGGTCTCCGGTCGTGGAGATGTCTGTATAGTCTGGTTGTAAGAACAGGATGATTGAGTATTGTGTTTTTCGTTAAAGGTGCTAATGCGAACTATGAACTtgacttgcttttttttttttaaataaagacaatgGTAAATTGTA

Function

symbol description
smarcb1b Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin remodeling. Predicted to be located in nuclear chromosome. Predicted to be part of chromatin. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 3; atypical teratoid rhabdoid tumor; neurilemmomatosis; and rhabdoid cancer. Orthologous to human SMARCB1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1).
smarcb1 Enables several functions, including Tat protein binding activity; p53 binding activity; and transcription coactivator activity. Contributes to RNA polymerase I core promoter sequence-specific DNA binding activity. Involved in several processes, including chromatin organization; regulation of histone modification; and regulation of transcription, DNA-templated. Acts upstream of or within single stranded viral RNA replication via double stranded DNA intermediate. Located in fibrillar center and nucleoplasm. Part of SWI/SNF complex. Implicated in Coffin-Siris syndrome 3; atypical teratoid rhabdoid tumor; neurilemmomatosis; and rhabdoid cancer. Biomarker of colorectal adenocarcinoma; hepatocellular carcinoma; sinonasal undifferentiated carcinoma; and synovial sarcoma.

NR:

description
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X2

GO:

id name namespace
GO:0006337 nucleosome disassembly biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0006281 DNA repair biological_process
GO:0000228 nuclear chromosome cellular_component

KEGG:

id description
K11648 SMARCB1, SNF5, INI1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222163.1 True 1531 mRNA 0.49 10 2744887 2752853

Neighbor

gene id symbol gene type direction distance location
LOC122326563 LOC107579035,LOC107736917 coding upstream 88127 2631096 ~ 2656760 (+)
LOC122326565 LOC107579035 coding upstream 117534 2618235 ~ 2627353 (+)
LOC122326937 NA coding upstream 457599 2280581 ~ 2287288 (+)
slc31a2 LOC107661547 coding upstream 745840 1995787 ~ 1999047 (+)
LOC122326700 NA coding upstream 791661 1949736 ~ 1953226 (+)
chchd10 chchd10,LOC107736936,LOC107692329,LOC107737885,LOC107662830 coding downstream 29495 2782348 ~ 2784025 (+)
ddt ddt,LOC107736937,LOC107662822,LOC107737884,LOC107692330 coding downstream 31620 2784473 ~ 2786135 (+)
gstt1b LOC107548781,LOC107661340,LOC107595683,LOC107737872 coding downstream 33791 2786644 ~ 2789093 (+)
p2rx4a p2rx4,p2rx4a,LOC107737869 coding downstream 36654 2789507 ~ 2793545 (+)
idh3b idh3b,LOC107737870,LOC107736889,LOC107548787 coding downstream 40835 2793688 ~ 2800500 (+)
G143385 NA non-coding upstream 201580 2487403 ~ 2543307 (+)
G143349 NA non-coding upstream 254687 2426489 ~ 2490200 (+)
G143356 NA non-coding upstream 340797 2402747 ~ 2404090 (+)
G143354 LOC107595722,LOC107662860,LOC107739708,LOC107548798 non-coding upstream 344818 2399072 ~ 2400069 (+)
G143340 NA non-coding upstream 406417 2336781 ~ 2338470 (+)
G143465 NA non-coding downstream 47877 2800730 ~ 2801348 (+)
G143491 NA non-coding downstream 109919 2862772 ~ 2863017 (+)
G143509 NA non-coding downstream 177409 2930262 ~ 2937617 (+)
G143578 NA non-coding downstream 562324 3315177 ~ 3315473 (+)
LOC122326852 NA non-coding downstream 583408 3336261 ~ 3336689 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 507692 2233659 ~ 2237195 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other upstream 688208 2030104 ~ 2056679 (+)
LOC122326311 NA other upstream 1515832 1227998 ~ 1229055 (+)
glrx glrx,LOC107661879,LOC107665229 other upstream 1588745 1153104 ~ 1156142 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 1688962 1050838 ~ 1055925 (+)
gnrh2 LOC107595723 other downstream 76261 2829114 ~ 2830356 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 545137 3297990 ~ 3320013 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 948576 3701429 ~ 3704397 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other downstream 1353948 4106801 ~ 4213772 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other downstream 1379583 4132436 ~ 4386212 (+)

Expression


Co-expression Network