ubap2a (ubap2a,ubap2,LOC107665236,LOC107661806)


Basic Information

Item Value
gene id ubap2a
gene name ubap2a,ubap2,LOC107665236,LOC107661806
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1213900 ~ 1227997 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222172.1
GCGCGCGCTTGTGAATGTGCGGGAGCGCGCCTGTAGGATCTGCATGGAGAGAAGCGGCAGCGGCGCGGTGACGGTCACGTGACGGAGTTTGCTGCTGGCTGAGTGAAGCGTGTTAgcagatttttctgttttgtacatacattgttttgtatatactgtatatgatgaCCTCGGTGGGCGTCGAACGAGCCCGGGGCACTCGGGACAAAACGCTGCCCACTACCACACAGACCACACAACCACAGAAACAGCTTCAGGCTACAGCCGAACAGATTCGTCTGGCCCAGATGATCTATGACAAGAATGATGCAGATTTTGAGGATAAAGTGAAACAGCTCATGGAGGTTACAGGAAAGAACCAAGACGATTGCATGGTTGCTCTTCACGACTGCAACGAGGATGTCAACAGAGCCATCAACTTCCTGCTTGAGGGAACTTCTGATGCGACTTCTTGGGAAACCGtggggaaaaagaaaagtcttGGAAAGGATGCCACCTCCACAGATGGTAAGGAAAACAAGGAGAACCGggagaagaaagagagggaaagcaGCAAGGGTCGTGGAGGAGCGAGTCGTCGTGGCAGAGGGACCAGTCGCAACCGGCCAGcGAGGACTGAGGAGAATGGTGTGGACCCTGCTCCTGTTGAGAGAGGTGCTGACCGTGGCCGcaggggaagaggaagagtgtCTGGAGGTAGAGGCAGAGGTCGGGCTCCGATTACCAGCAGGTTTACAGCACAAGGGATGGGAACCTTTAACCCTGCAGACTACACCACAGATAGCAGGACATCAAATTCACACACCGATGTCTGGGAGACGGGGGCCAATGACACTGCAGATGGGACAGTGGCATGGCAGAACACTTTGGACGAGTGGGcagctgaagactggagtgaagATCTCTCTGAGACCAAAGTGTTCACTTCCTCTTGTGCACCTCCACCCGAGAACCACATCACACCTGGCCAAAGCCTGGATCTATCGACTCTGCTGCAGAAGCCTGTGGATCGTGAGGAGGTGGGAGGTCTGAAGGCCGTGGGCTCCTCTCAGGGGCTTGGCCACAGTCTGGTCTTCACCAACTCCCACCACCAGCCTGCTCGAAACGGAGGCACATCTGCTGGTTCCAACAGCTACACACACGCCACCCTGTCCTCTGTTTTGGGTTCTGGTTTTGGAGAGCTGGGTGGTCCAAAACTCGGGCAGACGGCCGGGCAGCAAATACTGGAACAGCTGAAGGGGCCTGGTCTTGGGCAGCTTACCTCCCAGCCCTCCAGCACAGGGACCAACTGCACCCCTGTAGGGGGGCTGGTGGGGACGGGGATATCtgtcccctcctcctcctcctgggACATCAAACCTCCTGGAACACAAAGCTCCGCTTCACTCCCTTCTCAATTCAGTCGGGAGTTTCAGATGCAGCCAGAGCCATCTTTGGTGCTAAGCCAACTCGCTCAGCGACAGCAGGGCTCCCTGACCCACACGGGGCCTCTAACCAGGCAGCCCAGTCCTCCCCCACTGAGTACCCCTTCGCCCGCCCCGGGCACACTGGAAGCCTTTCCGAAAGCGCCAGAACCTTCTCAGCACCGTGACGGACCCTCCATGGCCCCCTCACAGGCAGCCGAATCTCAGGGCAGCAGCACACAGCAGCGGCAGATAAAGACTCAAAAGCGAAGGATACCTCCCACTTCAAAGATCCCTGCATCTGCTGTAGAGATGCCAGGCTCAGCAGATGTGTCCGGTCTAAATGTGCAGTTTGGTGCCCTGGACTTTGGTTCAGAATCTGCCCTGCCGGACTTCGGCCAGTCGGAGAACTGCAACAGTGAACCCTTAAGGGAGGCTGCGGTGGTTCCTCAGTCACAGAGCAGCCTTTACTCTAAACCAATCAGTGAATCTCTGACCAGTCCGGTCCCCTTGCTGCTGCCTCTGGCCTCTTCTGACAGCATCTACCCTTCTCCCTCGGTACCTCTCCCCAGTCTCGCCCCCTCCCACACCACCCCCAGCTCGGCCACAGCCCCctcatcctcttcatcctcctcttcttcctccgcTGCATCATCAGCGGGTAACAGCTTTGACTGTGGTGTGGCTCCTCATTCAAGACTGACCTTCTCTCAGAGCAAGGAGCCTTCTGGACCTGTGACAAACGGTTTTAGTGGTGCGAGGACCTCTGCTGCTTTAGACACCACATCGAGTTCCTCCACTCCAAAGCAAGAGTCTCCCTCTCTGGCCAGCAGCACAAGTGTTGCCCCATCTGCCCCATCCTCGCTGTTGCCCCCTTCTGTTACACCACACAATTCTGCTCTGCCCAGCCTGGCTTCTGAGCTCTCCTCTGCCAGCTTACCTCCCCTCAGCAGtcatGTGAGCAGTGGCCATTCCGCTGTGTCGGCACTTTGCACCACATCTTCACTTACATATACCAGTGTGGACAGCGTGAACTCTCTCGCCCCCTCATCAATGGTGTTTTCCTCGCCACCCGTGTCCGTTCTGCCTAGCAACAGTGTTAGCAGCTCAGTGAGTGGCAGCAATAGTCTGCACGGGCCTGGAACTTTGGGTCACGGCACCAACGGTAGCGCACCTTCCGGTGTCAGGACTGCCCCGCTACTGTCTTCCTCCAGCGGTAAAGCTCCTCCTAATCTCTCTCAGGGGGTTCCTCCACTGCTGCCTAACCAGTACATCATGGGACCCGGAGGTCTGCTGCCTGCCTATCCGCAGATATATGGCTATGAAGACCTCCACATGCTCCAGTCCAGACTACCAATGGATTACTATGGAATCACATTCCCAGGGCCGACTGCTACGCTGTCTGGCAGAGATGGGAGCCTCGCCAGCAACCCTTACTCAGGTGACGTCGCTAAGTTTGGCAGAGGTGAATCCACCTCACCGGCGCCCTCTACCAGCCTGTCTGCTCACGCCCCACAGACGGCGCAGCCTCCTCAGGCTCAGAGCCAAGGACAGAACCAGCCCCAGCCGCAAGGCCACCACAACACACAACAACCCTTCTTAAACCCAGCCCTACCCCCTGGATACAGCTACACAGGCCTTCCCTACTACCCCGGCGTGCCCAGTGCTTTCCAGTACGGCCCTACCATGTTCGTTCCCCCTGCTTCGGCCAAGCAGCACGGCATGGGACTGAGCAACCCAACAACGCCATTCCAGCAGCCCAGCGGCTACGGACAACACGCCTTTAGCTCAGGGTATGATGACCTGACGCAAGGCCCAGCAGGAACTGAGTACAGCAAAGGTTACAGTAACTCTTCTCAAACACAGGCCAAATCTGCTGCCTCCGGCCCAGGGAAAGTACTTTGTGTCCCAGGTGTCTCTGTGACATCTAGCAATTCTGGGGTGCCAGACATCAGTGGAACtgtttacaataaaacacagaatgtCTTTGTGCTTTTCCTGTAG

Function

symbol description
ubap2a Predicted to be active in cytoplasm and nucleus. Orthologous to human UBAP2 (ubiquitin associated protein 2).
ubap2 Enables RNA binding activity and cadherin binding activity. Predicted to be involved in regulation of gene expression. Predicted to be located in P-body. Predicted to be active in cytoplasm and nucleus.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222172.1 True 3407 mRNA 0.57 26 1213900 1227997

Neighbor

gene id symbol gene type direction distance location
dcaf12 dcaf12,LOC107661821,LOC107739683,LOC107600922,LOC107754635,LOC107584538,LOC107665237 coding upstream 1111 1203394 ~ 1212789 (+)
ubap1 ubap1,LOC107661828,LOC107739682,LOC107754631,LOC107665242 coding upstream 14127 1192399 ~ 1199773 (+)
nudt2 nudt2,LOC107739745,LOC107661859,LOC107600925,LOC107579639,LOC107584670,LOC107754633,LOC107665228 coding upstream 29830 1180455 ~ 1184070 (+)
ell2 ell2,LOC107739680,LOC107665220,LOC107600927,LOC107754629 coding upstream 61396 1139245 ~ 1152504 (+)
pcsk1 LOC107739678,LOC107661910,LOC107600928,LOC107665244 coding upstream 82275 1116591 ~ 1131625 (+)
mlnl mlnl coding downstream 10458 1238455 ~ 1241794 (+)
aqp7 aqp7,LOC107661734,LOC107600917,LOC107739721 coding downstream 20117 1248114 ~ 1255051 (+)
kiaa1328 kiaa1328,LOC107600915,LOC107661705 coding downstream 30179 1258176 ~ 1277613 (+)
odf2a LOC107600900,LOC107739747,LOC107736864,LOC107675630,LOC107584531 coding downstream 494856 1722853 ~ 1731673 (+)
sptan1 sptan1,spna2,LOC107675629 coding downstream 505736 1733733 ~ 1761705 (+)
G142950 NA non-coding upstream 11477 1201376 ~ 1202423 (+)
G142952 NA non-coding upstream 12656 1200736 ~ 1201244 (+)
G142965 rfesd,LOC107661841,LOC107600903,LOC107735162 non-coding upstream 35261 1108322 ~ 1178639 (+)
G142964 NA non-coding upstream 106948 1106746 ~ 1106952 (+)
G142963 NA non-coding upstream 108083 1105485 ~ 1105817 (+)
G142943 NA non-coding downstream 1551 1229548 ~ 1236155 (+)
G143139 wdr34,LOC107736865,LOC107584613 non-coding downstream 534385 1762382 ~ 1762837 (+)
G143140 NA non-coding downstream 535479 1763476 ~ 1763743 (+)
G143144 NA non-coding downstream 536764 1764761 ~ 1765095 (+)
G143149 NA non-coding downstream 611335 1839332 ~ 1963020 (+)
glrx glrx,LOC107661879,LOC107665229 other upstream 57758 1153104 ~ 1156142 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 157975 1050838 ~ 1055925 (+)
alpk2 LOC107600938,LOC107662700 other upstream 407794 735722 ~ 806106 (+)
LOC122326311 NA other downstream 1 1227998 ~ 1229055 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other downstream 802107 2030104 ~ 2056679 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 1005662 2233659 ~ 2237195 (+)
gnrh2 LOC107595723 other downstream 1601117 2829114 ~ 2830356 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 2069993 3297990 ~ 3320013 (+)

Expression


Co-expression Network